Hb_108404_010

Information

Type -
Description -
Location Contig108404: 13-779
Sequence    

Annotation

kegg
ID pda:103696552
description uncharacterized LOC103696552
nr
ID WP_042918419.1
description MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
swissprot
ID -
description -
trembl
ID A0A0D2ZQB0
description Uncharacterized protein OS=Brassica oleracea var. oleracea PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_108404_010 0.0 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
2 Hb_128287_010 0.0187614757 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
3 Hb_002673_050 0.0484691051 - - -
4 Hb_091369_010 0.0504980956 - - -
5 Hb_008473_010 0.0514804269 - - PREDICTED: laccase-14-like [Jatropha curcas]
6 Hb_000204_180 0.0600955867 - - PREDICTED: uncharacterized protein LOC104094989 [Nicotiana tomentosiformis]
7 Hb_000944_010 0.0621475201 - - PREDICTED: uncharacterized protein LOC105631113 [Jatropha curcas]
8 Hb_003400_030 0.0622456712 - - PREDICTED: uncharacterized protein LOC104234330 [Nicotiana sylvestris]
9 Hb_002400_450 0.0669658877 - - PREDICTED: protein MEMO1 isoform X2 [Sesamum indicum]
10 Hb_000260_190 0.06940437 - - -
11 Hb_034667_010 0.0735566685 - - -
12 Hb_008151_030 0.0800456629 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
13 Hb_010399_020 0.0839409532 - - PREDICTED: uncharacterized protein LOC104094989 [Nicotiana tomentosiformis]
14 Hb_000227_110 0.087854516 - - hypothetical protein CICLE_v10010500mg, partial [Citrus clementina]
15 Hb_002141_010 0.0995473259 - - UDP-glucuronosyltransferase, putative [Ricinus communis]
16 Hb_013205_010 0.1162217472 - - PREDICTED: putative B3 domain-containing protein At2g27410 [Jatropha curcas]
17 Hb_079543_010 0.1279109102 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
18 Hb_000362_230 0.1430100434 - - UDP-glucosyltransferase, putative [Ricinus communis]
19 Hb_155911_010 0.1550592366 - - hypothetical protein JCGZ_26951 [Jatropha curcas]
20 Hb_001142_020 0.160868783 - - -

Gene co-expression network

sample Hb_108404_010 Hb_108404_010 Hb_128287_010 Hb_128287_010 Hb_108404_010--Hb_128287_010 Hb_002673_050 Hb_002673_050 Hb_108404_010--Hb_002673_050 Hb_091369_010 Hb_091369_010 Hb_108404_010--Hb_091369_010 Hb_008473_010 Hb_008473_010 Hb_108404_010--Hb_008473_010 Hb_000204_180 Hb_000204_180 Hb_108404_010--Hb_000204_180 Hb_000944_010 Hb_000944_010 Hb_108404_010--Hb_000944_010 Hb_128287_010--Hb_000204_180 Hb_128287_010--Hb_002673_050 Hb_000227_110 Hb_000227_110 Hb_128287_010--Hb_000227_110 Hb_128287_010--Hb_091369_010 Hb_128287_010--Hb_008473_010 Hb_002673_050--Hb_091369_010 Hb_002673_050--Hb_008473_010 Hb_002673_050--Hb_000944_010 Hb_003400_030 Hb_003400_030 Hb_002673_050--Hb_003400_030 Hb_002400_450 Hb_002400_450 Hb_002673_050--Hb_002400_450 Hb_000260_190 Hb_000260_190 Hb_002673_050--Hb_000260_190 Hb_091369_010--Hb_008473_010 Hb_091369_010--Hb_000944_010 Hb_091369_010--Hb_003400_030 Hb_091369_010--Hb_002400_450 Hb_091369_010--Hb_000260_190 Hb_008473_010--Hb_000944_010 Hb_008473_010--Hb_003400_030 Hb_008473_010--Hb_002400_450 Hb_008473_010--Hb_000260_190 Hb_000204_180--Hb_000227_110 Hb_002141_010 Hb_002141_010 Hb_000204_180--Hb_002141_010 Hb_079543_010 Hb_079543_010 Hb_000204_180--Hb_079543_010 Hb_000362_230 Hb_000362_230 Hb_000204_180--Hb_000362_230 Hb_000944_010--Hb_003400_030 Hb_000944_010--Hb_002400_450 Hb_000944_010--Hb_000260_190 Hb_034667_010 Hb_034667_010 Hb_000944_010--Hb_034667_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0.0799596 0.0558252
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis