Hb_000227_110

Information

Type -
Description -
Location Contig227: 72075-72678
Sequence    

Annotation

kegg
ID cic:CICLE_v10010500mg
description hypothetical protein
nr
ID XP_006453249.1
description hypothetical protein CICLE_v10010500mg, partial [Citrus clementina]
swissprot
ID Q9M0N8
description Mitotic-spindle organizing protein 1B OS=Arabidopsis thaliana GN=GIP1 PE=1 SV=1
trembl
ID V4WIC7
description Uncharacterized protein (Fragment) OS=Citrus clementina GN=CICLE_v10010500mg PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_23596: 72015-72140
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000227_110 0.0 - - hypothetical protein CICLE_v10010500mg, partial [Citrus clementina]
2 Hb_002141_010 0.0117365119 - - UDP-glucuronosyltransferase, putative [Ricinus communis]
3 Hb_000204_180 0.0278192267 - - PREDICTED: uncharacterized protein LOC104094989 [Nicotiana tomentosiformis]
4 Hb_079543_010 0.0402545039 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
5 Hb_000362_230 0.0554655466 - - UDP-glucosyltransferase, putative [Ricinus communis]
6 Hb_155911_010 0.0676198208 - - hypothetical protein JCGZ_26951 [Jatropha curcas]
7 Hb_128287_010 0.0691382349 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
8 Hb_001142_020 0.0734852337 - - -
9 Hb_108404_010 0.087854516 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
10 Hb_002673_050 0.1361045566 - - -
11 Hb_091369_010 0.1381212931 - - -
12 Hb_008473_010 0.139097605 - - PREDICTED: laccase-14-like [Jatropha curcas]
13 Hb_000944_010 0.1496957161 - - PREDICTED: uncharacterized protein LOC105631113 [Jatropha curcas]
14 Hb_003400_030 0.1497932019 - - PREDICTED: uncharacterized protein LOC104234330 [Nicotiana sylvestris]
15 Hb_002400_450 0.1544807667 - - PREDICTED: protein MEMO1 isoform X2 [Sesamum indicum]
16 Hb_000260_190 0.1569018799 - - -
17 Hb_034667_010 0.1610238195 - - -
18 Hb_008151_030 0.1674634049 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
19 Hb_010399_020 0.1713278893 - - PREDICTED: uncharacterized protein LOC104094989 [Nicotiana tomentosiformis]
20 Hb_002022_050 0.1836702746 - - PREDICTED: O-acyltransferase WSD1-like isoform X1 [Populus euphratica]

Gene co-expression network

sample Hb_000227_110 Hb_000227_110 Hb_002141_010 Hb_002141_010 Hb_000227_110--Hb_002141_010 Hb_000204_180 Hb_000204_180 Hb_000227_110--Hb_000204_180 Hb_079543_010 Hb_079543_010 Hb_000227_110--Hb_079543_010 Hb_000362_230 Hb_000362_230 Hb_000227_110--Hb_000362_230 Hb_155911_010 Hb_155911_010 Hb_000227_110--Hb_155911_010 Hb_128287_010 Hb_128287_010 Hb_000227_110--Hb_128287_010 Hb_002141_010--Hb_079543_010 Hb_002141_010--Hb_000204_180 Hb_002141_010--Hb_000362_230 Hb_002141_010--Hb_155911_010 Hb_001142_020 Hb_001142_020 Hb_002141_010--Hb_001142_020 Hb_000204_180--Hb_128287_010 Hb_108404_010 Hb_108404_010 Hb_000204_180--Hb_108404_010 Hb_000204_180--Hb_079543_010 Hb_000204_180--Hb_000362_230 Hb_079543_010--Hb_000362_230 Hb_079543_010--Hb_155911_010 Hb_079543_010--Hb_001142_020 Hb_000362_230--Hb_155911_010 Hb_000362_230--Hb_001142_020 Hb_155911_010--Hb_001142_020 Hb_155911_010--Hb_000204_180 Hb_128287_010--Hb_108404_010 Hb_002673_050 Hb_002673_050 Hb_128287_010--Hb_002673_050 Hb_091369_010 Hb_091369_010 Hb_128287_010--Hb_091369_010 Hb_008473_010 Hb_008473_010 Hb_128287_010--Hb_008473_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 2.96829 1.34518
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis