Hb_001524_110

Information

Type -
Description -
Location Contig1524: 221508-226090
Sequence    

Annotation

kegg
ID bvg:104883666
description uncharacterized LOC104883666
nr
ID XP_010277438.1
description PREDICTED: uncharacterized protein LOC104611877 isoform X2 [Nelumbo nucifera]
swissprot
ID -
description -
trembl
ID A5ATA8
description Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_035279 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_13101: 224738-224986
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001524_110 0.0 - - PREDICTED: uncharacterized protein LOC104611877 isoform X2 [Nelumbo nucifera]
2 Hb_000732_270 0.3306436327 - - PREDICTED: bifunctional riboflavin kinase/FMN phosphatase [Jatropha curcas]
3 Hb_000322_110 0.3337284411 - - PREDICTED: EPIDERMAL PATTERNING FACTOR-like protein 3 [Jatropha curcas]
4 Hb_137153_010 0.3445394243 - - -
5 Hb_002260_040 0.3492127979 - - PREDICTED: putative ribonuclease H protein At1g65750 [Malus domestica]
6 Hb_023323_010 0.3522500836 - - PREDICTED: uncharacterized protein LOC104901296 [Beta vulgaris subsp. vulgaris]
7 Hb_000032_300 0.3545638136 - - hypothetical protein JCGZ_20455 [Jatropha curcas]
8 Hb_001513_020 0.3549245048 - - PREDICTED: methionine aminopeptidase 1A isoform X1 [Jatropha curcas]
9 Hb_030215_010 0.3573667778 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
10 Hb_001712_050 0.3648308166 - - PREDICTED: uncharacterized protein LOC105641944 [Jatropha curcas]
11 Hb_098466_010 0.3680488483 - - PREDICTED: uncharacterized protein LOC105640954 [Jatropha curcas]
12 Hb_041774_010 0.3686865588 - - PREDICTED: putative disease resistance RPP13-like protein 1 [Jatropha curcas]
13 Hb_006960_020 0.372022381 - - PREDICTED: uncharacterized protein LOC102617255 [Citrus sinensis]
14 Hb_006846_090 0.3750753024 - - PREDICTED: uncharacterized protein LOC105648695 [Jatropha curcas]
15 Hb_079738_010 0.3770690291 - - hypothetical protein CISIN_1g036582mg, partial [Citrus sinensis]
16 Hb_001922_040 0.3787022654 - - reticulon family protein [Populus trichocarpa]
17 Hb_005656_060 0.3787051142 - - -
18 Hb_006634_010 0.3798264689 - - -
19 Hb_001758_020 0.3806647319 - - conserved hypothetical protein [Ricinus communis]
20 Hb_130775_010 0.3827002165 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_001524_110 Hb_001524_110 Hb_000732_270 Hb_000732_270 Hb_001524_110--Hb_000732_270 Hb_000322_110 Hb_000322_110 Hb_001524_110--Hb_000322_110 Hb_137153_010 Hb_137153_010 Hb_001524_110--Hb_137153_010 Hb_002260_040 Hb_002260_040 Hb_001524_110--Hb_002260_040 Hb_023323_010 Hb_023323_010 Hb_001524_110--Hb_023323_010 Hb_000032_300 Hb_000032_300 Hb_001524_110--Hb_000032_300 Hb_000732_270--Hb_000322_110 Hb_111834_010 Hb_111834_010 Hb_000732_270--Hb_111834_010 Hb_000732_270--Hb_023323_010 Hb_152439_010 Hb_152439_010 Hb_000732_270--Hb_152439_010 Hb_000103_360 Hb_000103_360 Hb_000732_270--Hb_000103_360 Hb_000322_110--Hb_023323_010 Hb_010620_010 Hb_010620_010 Hb_000322_110--Hb_010620_010 Hb_178613_010 Hb_178613_010 Hb_000322_110--Hb_178613_010 Hb_004480_070 Hb_004480_070 Hb_000322_110--Hb_004480_070 Hb_000322_110--Hb_137153_010 Hb_098466_010 Hb_098466_010 Hb_137153_010--Hb_098466_010 Hb_172112_010 Hb_172112_010 Hb_137153_010--Hb_172112_010 Hb_041774_010 Hb_041774_010 Hb_137153_010--Hb_041774_010 Hb_128287_010 Hb_128287_010 Hb_137153_010--Hb_128287_010 Hb_108404_010 Hb_108404_010 Hb_137153_010--Hb_108404_010 Hb_000204_180 Hb_000204_180 Hb_137153_010--Hb_000204_180 Hb_001252_150 Hb_001252_150 Hb_002260_040--Hb_001252_150 Hb_000086_220 Hb_000086_220 Hb_002260_040--Hb_000086_220 Hb_001922_040 Hb_001922_040 Hb_002260_040--Hb_001922_040 Hb_000612_070 Hb_000612_070 Hb_002260_040--Hb_000612_070 Hb_002890_260 Hb_002890_260 Hb_002260_040--Hb_002890_260 Hb_005496_060 Hb_005496_060 Hb_002260_040--Hb_005496_060 Hb_005989_010 Hb_005989_010 Hb_023323_010--Hb_005989_010 Hb_009973_020 Hb_009973_020 Hb_023323_010--Hb_009973_020 Hb_047661_010 Hb_047661_010 Hb_023323_010--Hb_047661_010 Hb_001678_020 Hb_001678_020 Hb_023323_010--Hb_001678_020 Hb_005656_060 Hb_005656_060 Hb_023323_010--Hb_005656_060 Hb_004650_020 Hb_004650_020 Hb_000032_300--Hb_004650_020 Hb_011640_020 Hb_011640_020 Hb_000032_300--Hb_011640_020 Hb_001087_020 Hb_001087_020 Hb_000032_300--Hb_001087_020 Hb_000457_160 Hb_000457_160 Hb_000032_300--Hb_000457_160 Hb_032006_010 Hb_032006_010 Hb_000032_300--Hb_032006_010 Hb_000907_100 Hb_000907_100 Hb_000032_300--Hb_000907_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0237196 0.0651828 0 0.248396 0.311951
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0651105 0 0.0928382 0 0

CAGE analysis