Hb_000032_300

Information

Type -
Description -
Location Contig32: 264330-264674
Sequence    

Annotation

kegg
ID rcu:RCOM_1692010
description Nonspecific lipid-transfer protein A, putative
nr
ID KDP25299.1
description hypothetical protein JCGZ_20455 [Jatropha curcas]
swissprot
ID Q43766
description Non-specific lipid-transfer protein 3 OS=Hordeum vulgare GN=LTP3 PE=3 SV=1
trembl
ID A0A067K0I1
description Non-specific lipid-transfer protein OS=Jatropha curcas GN=JCGZ_20455 PE=3 SV=1
Gene Ontology
ID GO:0008289
description non-specific lipid-transfer protein a-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000032_300 0.0 - - hypothetical protein JCGZ_20455 [Jatropha curcas]
2 Hb_004650_020 0.2578364383 - - -
3 Hb_011640_020 0.2955902262 - - hypothetical protein VITISV_036432 [Vitis vinifera]
4 Hb_001087_020 0.3046967417 - - PREDICTED: phytoene synthase 2, chloroplastic-like [Jatropha curcas]
5 Hb_000457_160 0.3060887475 - - PREDICTED: uncharacterized protein LOC105633076 [Jatropha curcas]
6 Hb_032006_010 0.3079790094 - - PREDICTED: uncharacterized protein LOC105634374 [Jatropha curcas]
7 Hb_000907_100 0.3105343849 transcription factor TF Family: zf-HD hypothetical protein POPTR_0012s03770g, partial [Populus trichocarpa]
8 Hb_000380_180 0.3120329612 - - kinase, putative [Ricinus communis]
9 Hb_024973_010 0.3150683112 - - PREDICTED: uncharacterized protein LOC105642097 isoform X2 [Jatropha curcas]
10 Hb_067188_010 0.3164246828 - - -
11 Hb_134310_010 0.3225669383 - - PREDICTED: ATP-dependent DNA helicase MER3 homolog [Jatropha curcas]
12 Hb_006076_030 0.323988958 desease resistance Gene Name: NB-ARC NBS resistance protein [Hevea brasiliensis]
13 Hb_002960_120 0.3260171838 - - PREDICTED: uncharacterized protein LOC105635318 [Jatropha curcas]
14 Hb_004884_060 0.3270906779 transcription factor TF Family: G2-like PREDICTED: putative Myb family transcription factor At1g14600 [Jatropha curcas]
15 Hb_006198_050 0.3284436105 - - protein with unknown function [Ricinus communis]
16 Hb_005656_060 0.3304011887 - - -
17 Hb_000086_220 0.3313629687 - - -
18 Hb_001102_110 0.3316203963 - - PREDICTED: xyloglucan galactosyltransferase KATAMARI1-like [Jatropha curcas]
19 Hb_001767_010 0.3323247856 - - PREDICTED: probable RNA helicase SDE3 [Populus euphratica]
20 Hb_004306_070 0.332414813 - - hypothetical protein 0_18789_01, partial [Pinus taeda]

Gene co-expression network

sample Hb_000032_300 Hb_000032_300 Hb_004650_020 Hb_004650_020 Hb_000032_300--Hb_004650_020 Hb_011640_020 Hb_011640_020 Hb_000032_300--Hb_011640_020 Hb_001087_020 Hb_001087_020 Hb_000032_300--Hb_001087_020 Hb_000457_160 Hb_000457_160 Hb_000032_300--Hb_000457_160 Hb_032006_010 Hb_032006_010 Hb_000032_300--Hb_032006_010 Hb_000907_100 Hb_000907_100 Hb_000032_300--Hb_000907_100 Hb_002983_020 Hb_002983_020 Hb_004650_020--Hb_002983_020 Hb_001767_010 Hb_001767_010 Hb_004650_020--Hb_001767_010 Hb_001102_110 Hb_001102_110 Hb_004650_020--Hb_001102_110 Hb_004884_060 Hb_004884_060 Hb_004650_020--Hb_004884_060 Hb_000380_180 Hb_000380_180 Hb_004650_020--Hb_000380_180 Hb_019153_040 Hb_019153_040 Hb_004650_020--Hb_019153_040 Hb_006198_050 Hb_006198_050 Hb_011640_020--Hb_006198_050 Hb_011640_020--Hb_000457_160 Hb_011640_020--Hb_000380_180 Hb_103873_010 Hb_103873_010 Hb_011640_020--Hb_103873_010 Hb_011640_020--Hb_000907_100 Hb_006602_010 Hb_006602_010 Hb_011640_020--Hb_006602_010 Hb_001195_540 Hb_001195_540 Hb_001087_020--Hb_001195_540 Hb_001512_020 Hb_001512_020 Hb_001087_020--Hb_001512_020 Hb_007904_140 Hb_007904_140 Hb_001087_020--Hb_007904_140 Hb_100804_010 Hb_100804_010 Hb_001087_020--Hb_100804_010 Hb_000085_080 Hb_000085_080 Hb_001087_020--Hb_000085_080 Hb_000457_160--Hb_006198_050 Hb_005656_060 Hb_005656_060 Hb_000457_160--Hb_005656_060 Hb_000208_290 Hb_000208_290 Hb_000457_160--Hb_000208_290 Hb_022288_020 Hb_022288_020 Hb_000457_160--Hb_022288_020 Hb_002027_340 Hb_002027_340 Hb_000457_160--Hb_002027_340 Hb_072912_010 Hb_072912_010 Hb_032006_010--Hb_072912_010 Hb_032006_010--Hb_004884_060 Hb_004545_150 Hb_004545_150 Hb_032006_010--Hb_004545_150 Hb_032006_010--Hb_001102_110 Hb_005470_010 Hb_005470_010 Hb_032006_010--Hb_005470_010 Hb_003906_110 Hb_003906_110 Hb_032006_010--Hb_003906_110 Hb_000907_100--Hb_004884_060 Hb_000155_070 Hb_000155_070 Hb_000907_100--Hb_000155_070 Hb_000571_070 Hb_000571_070 Hb_000907_100--Hb_000571_070 Hb_002301_020 Hb_002301_020 Hb_000907_100--Hb_002301_020 Hb_004126_010 Hb_004126_010 Hb_000907_100--Hb_004126_010 Hb_000907_100--Hb_003906_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.150578 0 0.0909883 0 0.328937 0.490771
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.269703 0 0.643475 0 0

CAGE analysis