Hb_007904_140

Information

Type -
Description -
Location Contig7904: 78867-80091
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007904_140 0.0 - - -
2 Hb_008768_030 0.2265411508 - - -
3 Hb_110559_010 0.2717390452 - - PREDICTED: uncharacterized protein LOC105800880, partial [Gossypium raimondii]
4 Hb_001357_070 0.2717653776 - - hypothetical protein CISIN_1g0004672mg, partial [Citrus sinensis]
5 Hb_062562_010 0.2718798698 - - PREDICTED: uncharacterized protein LOC104219776 [Nicotiana sylvestris]
6 Hb_000521_010 0.2721308917 - - PREDICTED: protein UPSTREAM OF FLC [Jatropha curcas]
7 Hb_144451_010 0.2723209382 - - hypothetical protein VITISV_001808 [Vitis vinifera]
8 Hb_000510_020 0.2723454534 - - PREDICTED: uncharacterized protein LOC103415345 [Malus domestica]
9 Hb_002893_160 0.2726086026 - - peptidase, putative [Ricinus communis]
10 Hb_010896_020 0.2726133521 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
11 Hb_137133_010 0.2985591116 - - hypothetical protein JCGZ_09913 [Jatropha curcas]
12 Hb_001195_540 0.3148546392 - - PREDICTED: J domain-containing protein required for chloroplast accumulation response 1 [Jatropha curcas]
13 Hb_001243_010 0.3214800836 - - PREDICTED: dirigent protein 4-like [Populus euphratica]
14 Hb_012253_010 0.3327307208 - - hypothetical protein PRUPE_ppa022673mg [Prunus persica]
15 Hb_001087_020 0.3522250924 - - PREDICTED: phytoene synthase 2, chloroplastic-like [Jatropha curcas]
16 Hb_015322_040 0.3551538711 - - PREDICTED: uncharacterized protein LOC104105697 [Nicotiana tomentosiformis]
17 Hb_000230_320 0.3591518596 - - PREDICTED: AP-5 complex subunit mu-like [Nelumbo nucifera]
18 Hb_001534_010 0.359792141 - - Alpha-expansin 3 precursor [Theobroma cacao]
19 Hb_001267_030 0.3661586912 - - hypothetical protein VITISV_041979 [Vitis vinifera]
20 Hb_000098_320 0.372130604 - - -

Gene co-expression network

sample Hb_007904_140 Hb_007904_140 Hb_008768_030 Hb_008768_030 Hb_007904_140--Hb_008768_030 Hb_110559_010 Hb_110559_010 Hb_007904_140--Hb_110559_010 Hb_001357_070 Hb_001357_070 Hb_007904_140--Hb_001357_070 Hb_062562_010 Hb_062562_010 Hb_007904_140--Hb_062562_010 Hb_000521_010 Hb_000521_010 Hb_007904_140--Hb_000521_010 Hb_144451_010 Hb_144451_010 Hb_007904_140--Hb_144451_010 Hb_015322_040 Hb_015322_040 Hb_008768_030--Hb_015322_040 Hb_001534_010 Hb_001534_010 Hb_008768_030--Hb_001534_010 Hb_000098_320 Hb_000098_320 Hb_008768_030--Hb_000098_320 Hb_001243_010 Hb_001243_010 Hb_008768_030--Hb_001243_010 Hb_000008_180 Hb_000008_180 Hb_008768_030--Hb_000008_180 Hb_110559_010--Hb_001357_070 Hb_110559_010--Hb_062562_010 Hb_110559_010--Hb_000521_010 Hb_110559_010--Hb_144451_010 Hb_000510_020 Hb_000510_020 Hb_110559_010--Hb_000510_020 Hb_002893_160 Hb_002893_160 Hb_110559_010--Hb_002893_160 Hb_001357_070--Hb_062562_010 Hb_001357_070--Hb_000521_010 Hb_001357_070--Hb_144451_010 Hb_001357_070--Hb_000510_020 Hb_001357_070--Hb_002893_160 Hb_062562_010--Hb_000521_010 Hb_062562_010--Hb_144451_010 Hb_062562_010--Hb_000510_020 Hb_062562_010--Hb_002893_160 Hb_010896_020 Hb_010896_020 Hb_062562_010--Hb_010896_020 Hb_000521_010--Hb_144451_010 Hb_000521_010--Hb_000510_020 Hb_000521_010--Hb_002893_160 Hb_000521_010--Hb_010896_020 Hb_144451_010--Hb_000510_020 Hb_144451_010--Hb_002893_160 Hb_144451_010--Hb_010896_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0 0.0442147
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.115259 0 0.156211 0 0

CAGE analysis