Hb_000085_080

Information

Type -
Description -
Location Contig85: 54771-59659
Sequence    

Annotation

kegg
ID vvi:100262389
description phosphatidate cytidylyltransferase
nr
ID XP_012070911.1
description PREDICTED: phosphatidate cytidylyltransferase 1 [Jatropha curcas]
swissprot
ID O49639
description Phosphatidate cytidylyltransferase 2 OS=Arabidopsis thaliana GN=CDS2 PE=1 SV=1
trembl
ID A0A067KSU0
description Phosphatidate cytidylyltransferase OS=Jatropha curcas GN=JCGZ_00954 PE=3 SV=1
Gene Ontology
ID GO:0016020
description phosphatidate cytidylyltransferase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000085_080 0.0 - - PREDICTED: phosphatidate cytidylyltransferase 1 [Jatropha curcas]
2 Hb_004553_020 0.2047696699 - - PREDICTED: non-structural maintenance of chromosomes element 1 homolog [Jatropha curcas]
3 Hb_100804_010 0.2081572148 - - BAHD family acyltransferase, clade V, putative [Theobroma cacao]
4 Hb_001662_060 0.2084413242 - - SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein isoform 1 [Theobroma cacao]
5 Hb_011316_020 0.2186182199 - - PREDICTED: uncharacterized protein LOC105648558 [Jatropha curcas]
6 Hb_000436_080 0.2315840825 - - unnamed protein product [Coffea canephora]
7 Hb_007765_020 0.2318168816 - - hypothetical protein JCGZ_08545 [Jatropha curcas]
8 Hb_064441_010 0.2366586254 - - PREDICTED: MACPF domain-containing protein CAD1-like isoform X1 [Jatropha curcas]
9 Hb_003680_190 0.2385139526 - - hypothetical protein POPTR_0006s11880g [Populus trichocarpa]
10 Hb_002078_480 0.2429101251 - - hypothetical protein CICLE_v10033318mg [Citrus clementina]
11 Hb_000690_070 0.2437132753 - - -
12 Hb_000422_120 0.2453524134 - - PREDICTED: 1-phosphatidylinositol-3-phosphate 5-kinase FAB1B [Jatropha curcas]
13 Hb_000898_050 0.2466299655 - - -
14 Hb_038564_010 0.2481732494 - - PREDICTED: serine/threonine-protein phosphatase 5 isoform X2 [Jatropha curcas]
15 Hb_001073_050 0.2507884154 - - -
16 Hb_008159_010 0.2514520509 - - PREDICTED: 66 kDa stress protein [Jatropha curcas]
17 Hb_001260_030 0.2519964082 - - conserved hypothetical protein [Ricinus communis]
18 Hb_023292_010 0.2533305546 - - Cucumisin precursor, putative [Ricinus communis]
19 Hb_005625_020 0.2543602451 transcription factor TF Family: bZIP PREDICTED: ABSCISIC ACID-INSENSITIVE 5-like protein 2 isoform X1 [Jatropha curcas]
20 Hb_004056_030 0.2548134568 - - hypothetical protein 33 [Hevea brasiliensis]

Gene co-expression network

sample Hb_000085_080 Hb_000085_080 Hb_004553_020 Hb_004553_020 Hb_000085_080--Hb_004553_020 Hb_100804_010 Hb_100804_010 Hb_000085_080--Hb_100804_010 Hb_001662_060 Hb_001662_060 Hb_000085_080--Hb_001662_060 Hb_011316_020 Hb_011316_020 Hb_000085_080--Hb_011316_020 Hb_000436_080 Hb_000436_080 Hb_000085_080--Hb_000436_080 Hb_007765_020 Hb_007765_020 Hb_000085_080--Hb_007765_020 Hb_000362_120 Hb_000362_120 Hb_004553_020--Hb_000362_120 Hb_005188_090 Hb_005188_090 Hb_004553_020--Hb_005188_090 Hb_005043_010 Hb_005043_010 Hb_004553_020--Hb_005043_010 Hb_000172_560 Hb_000172_560 Hb_004553_020--Hb_000172_560 Hb_001616_120 Hb_001616_120 Hb_004553_020--Hb_001616_120 Hb_005701_010 Hb_005701_010 Hb_004553_020--Hb_005701_010 Hb_023292_010 Hb_023292_010 Hb_100804_010--Hb_023292_010 Hb_001073_050 Hb_001073_050 Hb_100804_010--Hb_001073_050 Hb_006472_050 Hb_006472_050 Hb_100804_010--Hb_006472_050 Hb_001153_220 Hb_001153_220 Hb_100804_010--Hb_001153_220 Hb_001357_080 Hb_001357_080 Hb_100804_010--Hb_001357_080 Hb_000363_160 Hb_000363_160 Hb_100804_010--Hb_000363_160 Hb_001662_060--Hb_007765_020 Hb_004079_030 Hb_004079_030 Hb_001662_060--Hb_004079_030 Hb_008159_010 Hb_008159_010 Hb_001662_060--Hb_008159_010 Hb_000059_050 Hb_000059_050 Hb_001662_060--Hb_000059_050 Hb_000130_050 Hb_000130_050 Hb_001662_060--Hb_000130_050 Hb_000092_010 Hb_000092_010 Hb_001662_060--Hb_000092_010 Hb_004056_030 Hb_004056_030 Hb_011316_020--Hb_004056_030 Hb_003117_010 Hb_003117_010 Hb_011316_020--Hb_003117_010 Hb_092107_010 Hb_092107_010 Hb_011316_020--Hb_092107_010 Hb_001222_050 Hb_001222_050 Hb_011316_020--Hb_001222_050 Hb_000260_570 Hb_000260_570 Hb_011316_020--Hb_000260_570 Hb_000922_390 Hb_000922_390 Hb_011316_020--Hb_000922_390 Hb_001433_220 Hb_001433_220 Hb_000436_080--Hb_001433_220 Hb_001260_030 Hb_001260_030 Hb_000436_080--Hb_001260_030 Hb_000914_070 Hb_000914_070 Hb_000436_080--Hb_000914_070 Hb_007763_060 Hb_007763_060 Hb_000436_080--Hb_007763_060 Hb_006198_080 Hb_006198_080 Hb_000436_080--Hb_006198_080 Hb_000031_030 Hb_000031_030 Hb_000436_080--Hb_000031_030 Hb_007765_020--Hb_000092_010 Hb_003976_030 Hb_003976_030 Hb_007765_020--Hb_003976_030 Hb_001014_040 Hb_001014_040 Hb_007765_020--Hb_001014_040 Hb_007765_020--Hb_004079_030 Hb_005625_020 Hb_005625_020 Hb_007765_020--Hb_005625_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.21223 0.0268549 0.195159 0.83163 0.119902 1.40335
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.645407 0.265971 2.63621 0.62722 0.354293

CAGE analysis