Hb_001195_540

Information

Type -
Description -
Location Contig1195: 340663-350513
Sequence    

Annotation

kegg
ID pop:POPTR_0014s04210g
description hypothetical protein
nr
ID XP_012071800.1
description PREDICTED: J domain-containing protein required for chloroplast accumulation response 1 [Jatropha curcas]
swissprot
ID Q9C9Q4
description J domain-containing protein required for chloroplast accumulation response 1 OS=Arabidopsis thaliana GN=JAC1 PE=1 SV=1
trembl
ID A0A067L1W3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04400 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001195_540 0.0 - - PREDICTED: J domain-containing protein required for chloroplast accumulation response 1 [Jatropha curcas]
2 Hb_002259_010 0.2987452897 - - conserved hypothetical protein [Ricinus communis]
3 Hb_001087_020 0.3054531504 - - PREDICTED: phytoene synthase 2, chloroplastic-like [Jatropha curcas]
4 Hb_001512_020 0.3086303364 - - PREDICTED: GDSL esterase/lipase At5g14450 [Jatropha curcas]
5 Hb_007904_140 0.3148546392 - - -
6 Hb_005539_120 0.3558320076 - - PREDICTED: probable LRR receptor-like protein kinase At1g51890 [Jatropha curcas]
7 Hb_008768_030 0.3799374195 - - -
8 Hb_000011_090 0.3888229342 - - PREDICTED: uncharacterized protein OsI_027940-like [Jatropha curcas]
9 Hb_000803_130 0.3994292499 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000032_300 0.4056396334 - - hypothetical protein JCGZ_20455 [Jatropha curcas]
11 Hb_006237_020 0.4253317463 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
12 Hb_004052_010 0.4260045405 - - PREDICTED: ninja-family protein AFP3-like isoform X2 [Jatropha curcas]
13 Hb_001623_320 0.4308585092 - - PREDICTED: heavy metal-associated isoprenylated plant protein 26 isoform X1 [Populus euphratica]
14 Hb_013483_010 0.4318984023 - - -
15 Hb_000186_340 0.4361008864 - - hypothetical protein POPTR_0011s01440g [Populus trichocarpa]
16 Hb_000690_070 0.4515279737 - - -
17 Hb_000157_040 0.4576142657 - - PREDICTED: cycloartenol-C-24-methyltransferase [Jatropha curcas]
18 Hb_099069_010 0.4578133343 - - S-adenosyl-methionine-sterol-C- methyltransferase [Ricinus communis]
19 Hb_000510_020 0.4592998713 - - PREDICTED: uncharacterized protein LOC103415345 [Malus domestica]
20 Hb_144451_010 0.4593009207 - - hypothetical protein VITISV_001808 [Vitis vinifera]

Gene co-expression network

sample Hb_001195_540 Hb_001195_540 Hb_002259_010 Hb_002259_010 Hb_001195_540--Hb_002259_010 Hb_001087_020 Hb_001087_020 Hb_001195_540--Hb_001087_020 Hb_001512_020 Hb_001512_020 Hb_001195_540--Hb_001512_020 Hb_007904_140 Hb_007904_140 Hb_001195_540--Hb_007904_140 Hb_005539_120 Hb_005539_120 Hb_001195_540--Hb_005539_120 Hb_008768_030 Hb_008768_030 Hb_001195_540--Hb_008768_030 Hb_000803_130 Hb_000803_130 Hb_002259_010--Hb_000803_130 Hb_002259_010--Hb_005539_120 Hb_052764_040 Hb_052764_040 Hb_002259_010--Hb_052764_040 Hb_002733_010 Hb_002733_010 Hb_002259_010--Hb_002733_010 Hb_000011_090 Hb_000011_090 Hb_002259_010--Hb_000011_090 Hb_000032_300 Hb_000032_300 Hb_001087_020--Hb_000032_300 Hb_001087_020--Hb_001512_020 Hb_001087_020--Hb_007904_140 Hb_100804_010 Hb_100804_010 Hb_001087_020--Hb_100804_010 Hb_000085_080 Hb_000085_080 Hb_001087_020--Hb_000085_080 Hb_004052_010 Hb_004052_010 Hb_001512_020--Hb_004052_010 Hb_028977_020 Hb_028977_020 Hb_001512_020--Hb_028977_020 Hb_001238_050 Hb_001238_050 Hb_001512_020--Hb_001238_050 Hb_000094_130 Hb_000094_130 Hb_001512_020--Hb_000094_130 Hb_007904_140--Hb_008768_030 Hb_110559_010 Hb_110559_010 Hb_007904_140--Hb_110559_010 Hb_001357_070 Hb_001357_070 Hb_007904_140--Hb_001357_070 Hb_062562_010 Hb_062562_010 Hb_007904_140--Hb_062562_010 Hb_000521_010 Hb_000521_010 Hb_007904_140--Hb_000521_010 Hb_144451_010 Hb_144451_010 Hb_007904_140--Hb_144451_010 Hb_014430_010 Hb_014430_010 Hb_005539_120--Hb_014430_010 Hb_000130_450 Hb_000130_450 Hb_005539_120--Hb_000130_450 Hb_002382_020 Hb_002382_020 Hb_005539_120--Hb_002382_020 Hb_000181_190 Hb_000181_190 Hb_005539_120--Hb_000181_190 Hb_015322_040 Hb_015322_040 Hb_008768_030--Hb_015322_040 Hb_001534_010 Hb_001534_010 Hb_008768_030--Hb_001534_010 Hb_000098_320 Hb_000098_320 Hb_008768_030--Hb_000098_320 Hb_001243_010 Hb_001243_010 Hb_008768_030--Hb_001243_010 Hb_000008_180 Hb_000008_180 Hb_008768_030--Hb_000008_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.0137456 0 0 0.0162128
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0210505 0 0.0314611 0 0

CAGE analysis