Hb_002382_020

Information

Type -
Description -
Location Contig2382: 68142-69553
Sequence    

Annotation

kegg
ID pop:POPTR_0006s23500g
description POPTRDRAFT_1081290; hypothetical protein
nr
ID XP_012077169.1
description PREDICTED: 3beta-hydroxysteroid-dehydrogenase/decarboxylase isoform 2 [Jatropha curcas]
swissprot
ID Q9FX01
description 3beta-hydroxysteroid-dehydrogenase/decarboxylase isoform 1 OS=Arabidopsis thaliana GN=3BETAHSD/D1 PE=2 SV=1
trembl
ID A0A067KCZ3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07578 PE=3 SV=1
Gene Ontology
ID GO:0003854
description 3beta-hydroxysteroid-dehydrogenase decarboxylase isoform 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 003_L12r.ab1: 67653-68339

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002382_020 0.0 - - PREDICTED: 3beta-hydroxysteroid-dehydrogenase/decarboxylase isoform 2 [Jatropha curcas]
2 Hb_000010_450 0.3163219936 - - purine permease, putative [Ricinus communis]
3 Hb_000264_120 0.3256849754 - - Stem-specific protein TSJT1, putative [Ricinus communis]
4 Hb_002157_200 0.3353921826 - - hypothetical protein VITISV_040170 [Vitis vinifera]
5 Hb_000019_090 0.3669473478 - - PREDICTED: thioredoxin H4-1-like [Jatropha curcas]
6 Hb_057597_020 0.3669959903 - - PREDICTED: anti-H(O) lectin-like [Gossypium raimondii]
7 Hb_001396_060 0.3684443112 - - conserved hypothetical protein [Ricinus communis]
8 Hb_001246_050 0.3707024005 - - PREDICTED: uncharacterized protein LOC105643262 [Jatropha curcas]
9 Hb_006569_070 0.3724951277 - - nucleic acid binding protein, putative [Ricinus communis]
10 Hb_003605_140 0.3726613759 - - conserved hypothetical protein [Ricinus communis]
11 Hb_003638_060 0.3732969628 transcription factor TF Family: Orphans PREDICTED: zinc finger protein CONSTANS-like [Jatropha curcas]
12 Hb_004324_230 0.3750306608 transcription factor TF Family: bHLH PREDICTED: transcription factor SPEECHLESS [Jatropha curcas]
13 Hb_005539_120 0.3755642628 - - PREDICTED: probable LRR receptor-like protein kinase At1g51890 [Jatropha curcas]
14 Hb_089889_010 0.3773931509 - - PREDICTED: RING finger and CHY zinc finger domain-containing protein 1 [Jatropha curcas]
15 Hb_001829_030 0.3802499854 - - PREDICTED: uncharacterized protein LOC105119087 [Populus euphratica]
16 Hb_000679_120 0.3877634221 - - hypothetical protein POPTR_0018s01610g [Populus trichocarpa]
17 Hb_000181_190 0.3891183546 - - PREDICTED: probable protein phosphatase 2C 39 [Jatropha curcas]
18 Hb_014430_010 0.3892384337 - - PREDICTED: chaperone protein dnaJ 11, chloroplastic-like [Jatropha curcas]
19 Hb_000975_140 0.3912926001 - - lactoylglutathione lyase family protein [Populus trichocarpa]
20 Hb_008147_110 0.3932361462 - - PREDICTED: phenolic glucoside malonyltransferase 1-like [Jatropha curcas]

Gene co-expression network

sample Hb_002382_020 Hb_002382_020 Hb_000010_450 Hb_000010_450 Hb_002382_020--Hb_000010_450 Hb_000264_120 Hb_000264_120 Hb_002382_020--Hb_000264_120 Hb_002157_200 Hb_002157_200 Hb_002382_020--Hb_002157_200 Hb_000019_090 Hb_000019_090 Hb_002382_020--Hb_000019_090 Hb_057597_020 Hb_057597_020 Hb_002382_020--Hb_057597_020 Hb_001396_060 Hb_001396_060 Hb_002382_020--Hb_001396_060 Hb_004324_230 Hb_004324_230 Hb_000010_450--Hb_004324_230 Hb_004228_060 Hb_004228_060 Hb_000010_450--Hb_004228_060 Hb_003638_060 Hb_003638_060 Hb_000010_450--Hb_003638_060 Hb_000592_120 Hb_000592_120 Hb_000010_450--Hb_000592_120 Hb_003605_140 Hb_003605_140 Hb_000010_450--Hb_003605_140 Hb_078641_020 Hb_078641_020 Hb_000010_450--Hb_078641_020 Hb_000349_190 Hb_000349_190 Hb_000264_120--Hb_000349_190 Hb_002641_040 Hb_002641_040 Hb_000264_120--Hb_002641_040 Hb_004129_080 Hb_004129_080 Hb_000264_120--Hb_004129_080 Hb_000181_190 Hb_000181_190 Hb_000264_120--Hb_000181_190 Hb_089889_010 Hb_089889_010 Hb_000264_120--Hb_089889_010 Hb_004163_020 Hb_004163_020 Hb_000264_120--Hb_004163_020 Hb_003897_020 Hb_003897_020 Hb_002157_200--Hb_003897_020 Hb_002157_200--Hb_003605_140 Hb_001049_080 Hb_001049_080 Hb_002157_200--Hb_001049_080 Hb_000392_200 Hb_000392_200 Hb_002157_200--Hb_000392_200 Hb_002157_200--Hb_000010_450 Hb_010515_030 Hb_010515_030 Hb_002157_200--Hb_010515_030 Hb_000019_090--Hb_057597_020 Hb_000019_090--Hb_001396_060 Hb_001829_030 Hb_001829_030 Hb_000019_090--Hb_001829_030 Hb_008147_110 Hb_008147_110 Hb_000019_090--Hb_008147_110 Hb_105478_010 Hb_105478_010 Hb_000019_090--Hb_105478_010 Hb_000172_500 Hb_000172_500 Hb_000019_090--Hb_000172_500 Hb_057597_020--Hb_001396_060 Hb_057597_020--Hb_001829_030 Hb_057597_020--Hb_008147_110 Hb_057597_020--Hb_105478_010 Hb_057597_020--Hb_000172_500 Hb_001396_060--Hb_001829_030 Hb_001396_060--Hb_008147_110 Hb_001396_060--Hb_105478_010 Hb_183612_020 Hb_183612_020 Hb_001396_060--Hb_183612_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.586365 0 0 0.0602743
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0759715 0.133439 0 0

CAGE analysis