Hb_004052_010

Information

Type -
Description -
Location Contig4052: 33683-36347
Sequence    

Annotation

kegg
ID tcc:TCM_014277
description RNA binding-like protein
nr
ID XP_012080391.1
description PREDICTED: ninja-family protein AFP3-like isoform X2 [Jatropha curcas]
swissprot
ID Q9LMX5
description Ninja-family protein AFP2 OS=Arabidopsis thaliana GN=AFP2 PE=1 SV=1
trembl
ID A0A061FYE6
description RNA binding-like protein OS=Theobroma cacao GN=TCM_014277 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_40172: 35810-36161
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004052_010 0.0 - - PREDICTED: ninja-family protein AFP3-like isoform X2 [Jatropha curcas]
2 Hb_001277_090 0.2282684294 - - PREDICTED: uncharacterized protein LOC105632061 [Jatropha curcas]
3 Hb_000141_030 0.2309629974 - - PREDICTED: scarecrow-like protein 22 [Jatropha curcas]
4 Hb_000172_570 0.2322200635 - - PREDICTED: uncharacterized protein LOC105636518 isoform X1 [Jatropha curcas]
5 Hb_006153_080 0.242939824 - - flavin-containing monooxygenase-related family protein [Populus trichocarpa]
6 Hb_005569_020 0.2433952176 - - conserved hypothetical protein [Ricinus communis]
7 Hb_000712_050 0.243587804 - - PREDICTED: inositol oxygenase 1-like isoform X1 [Citrus sinensis]
8 Hb_023732_040 0.2437747596 - - cytochrome P450, putative [Ricinus communis]
9 Hb_000477_080 0.2511395606 - - PREDICTED: 3-ketoacyl-CoA synthase 11 [Jatropha curcas]
10 Hb_002150_060 0.2520982627 - - PREDICTED: arabinogalactan peptide 20-like [Jatropha curcas]
11 Hb_005489_100 0.2557402423 - - conserved hypothetical protein [Ricinus communis]
12 Hb_010931_050 0.2567778439 transcription factor TF Family: Jumonji PREDICTED: lysine-specific demethylase JMJ25-like [Jatropha curcas]
13 Hb_003994_190 0.2615860717 - - conserved hypothetical protein [Ricinus communis]
14 Hb_006198_180 0.2630647117 - - PREDICTED: thiamine-repressible mitochondrial transport protein THI74 isoform X1 [Jatropha curcas]
15 Hb_011316_060 0.2676535537 - - alpha-l-fucosidase, putative [Ricinus communis]
16 Hb_000562_040 0.2676626533 - - PREDICTED: auxin response factor 5 isoform X1 [Jatropha curcas]
17 Hb_001287_010 0.268321918 - - PREDICTED: arginine decarboxylase [Jatropha curcas]
18 Hb_004324_050 0.2687000491 - - PREDICTED: spermine synthase [Jatropha curcas]
19 Hb_000368_060 0.2697648289 - - thioredoxin H-type 6 [Hevea brasiliensis]
20 Hb_001159_080 0.27313901 - - hypothetical protein JCGZ_20745 [Jatropha curcas]

Gene co-expression network

sample Hb_004052_010 Hb_004052_010 Hb_001277_090 Hb_001277_090 Hb_004052_010--Hb_001277_090 Hb_000141_030 Hb_000141_030 Hb_004052_010--Hb_000141_030 Hb_000172_570 Hb_000172_570 Hb_004052_010--Hb_000172_570 Hb_006153_080 Hb_006153_080 Hb_004052_010--Hb_006153_080 Hb_005569_020 Hb_005569_020 Hb_004052_010--Hb_005569_020 Hb_000712_050 Hb_000712_050 Hb_004052_010--Hb_000712_050 Hb_000094_130 Hb_000094_130 Hb_001277_090--Hb_000094_130 Hb_000327_220 Hb_000327_220 Hb_001277_090--Hb_000327_220 Hb_001277_090--Hb_000141_030 Hb_001277_090--Hb_006153_080 Hb_011360_080 Hb_011360_080 Hb_001277_090--Hb_011360_080 Hb_004785_140 Hb_004785_140 Hb_001277_090--Hb_004785_140 Hb_000963_140 Hb_000963_140 Hb_000141_030--Hb_000963_140 Hb_010931_050 Hb_010931_050 Hb_000141_030--Hb_010931_050 Hb_000141_030--Hb_011360_080 Hb_004429_070 Hb_004429_070 Hb_000141_030--Hb_004429_070 Hb_004324_050 Hb_004324_050 Hb_000141_030--Hb_004324_050 Hb_000368_060 Hb_000368_060 Hb_000141_030--Hb_000368_060 Hb_002073_120 Hb_002073_120 Hb_000172_570--Hb_002073_120 Hb_000227_200 Hb_000227_200 Hb_000172_570--Hb_000227_200 Hb_000172_570--Hb_000141_030 Hb_003599_070 Hb_003599_070 Hb_000172_570--Hb_003599_070 Hb_000995_070 Hb_000995_070 Hb_000172_570--Hb_000995_070 Hb_000784_040 Hb_000784_040 Hb_000172_570--Hb_000784_040 Hb_004679_050 Hb_004679_050 Hb_006153_080--Hb_004679_050 Hb_005542_060 Hb_005542_060 Hb_006153_080--Hb_005542_060 Hb_000340_310 Hb_000340_310 Hb_006153_080--Hb_000340_310 Hb_001096_110 Hb_001096_110 Hb_006153_080--Hb_001096_110 Hb_000130_110 Hb_000130_110 Hb_006153_080--Hb_000130_110 Hb_005569_020--Hb_001096_110 Hb_000141_020 Hb_000141_020 Hb_005569_020--Hb_000141_020 Hb_010407_180 Hb_010407_180 Hb_005569_020--Hb_010407_180 Hb_000406_120 Hb_000406_120 Hb_005569_020--Hb_000406_120 Hb_001159_080 Hb_001159_080 Hb_005569_020--Hb_001159_080 Hb_000108_070 Hb_000108_070 Hb_005569_020--Hb_000108_070 Hb_005489_100 Hb_005489_100 Hb_000712_050--Hb_005489_100 Hb_003994_190 Hb_003994_190 Hb_000712_050--Hb_003994_190 Hb_001195_360 Hb_001195_360 Hb_000712_050--Hb_001195_360 Hb_002150_060 Hb_002150_060 Hb_000712_050--Hb_002150_060 Hb_002194_090 Hb_002194_090 Hb_000712_050--Hb_002194_090 Hb_000215_080 Hb_000215_080 Hb_000712_050--Hb_000215_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.598129 0.2941 2.13098 0.546725 0.291388 0.248997
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.41263 1.26066 8.52396 0.55625 0.166192

CAGE analysis