Hb_028977_020

Information

Type -
Description -
Location Contig28977: 17800-22330
Sequence    

Annotation

kegg
ID rcu:RCOM_0724720
description S-locus-specific glycoprotein S13 precursor, putative (EC:2.7.11.25)
nr
ID KDP20848.1
description hypothetical protein JCGZ_21319 [Jatropha curcas]
swissprot
ID Q9ZT07
description G-type lectin S-receptor-like serine/threonine-protein kinase RKS1 OS=Arabidopsis thaliana GN=RKS1 PE=3 SV=3
trembl
ID A0A067JDL4
description Serine/threonine-protein kinase OS=Jatropha curcas GN=JCGZ_21319 PE=3 SV=1
Gene Ontology
ID GO:0016301
description g-type lectin s-receptor-like serine threonine-protein kinase at1g11410

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_028977_020 0.0 - - hypothetical protein JCGZ_21319 [Jatropha curcas]
2 Hb_002073_140 0.2191057338 - - -
3 Hb_000120_120 0.2236851738 - - PREDICTED: phosphoinositide phospholipase C 2 [Jatropha curcas]
4 Hb_150651_050 0.2482446097 - - phosphoglycerate mutase, putative [Ricinus communis]
5 Hb_027892_010 0.2525512214 transcription factor TF Family: bHLH LMYC1 [Hevea brasiliensis]
6 Hb_000249_090 0.2806928815 - - PREDICTED: triacylglycerol lipase SDP1 [Jatropha curcas]
7 Hb_001267_030 0.2860486258 - - hypothetical protein VITISV_041979 [Vitis vinifera]
8 Hb_006061_010 0.2878569598 - - PREDICTED: phytosulfokines 4-like [Populus euphratica]
9 Hb_000249_130 0.2900489011 - - hypothetical protein RCOM_0254640 [Ricinus communis]
10 Hb_001799_080 0.2934139031 - - Flavonol synthase/flavanone 3-hydroxylase, putative [Ricinus communis]
11 Hb_000094_130 0.2958732802 - - PREDICTED: random slug protein 5 [Jatropha curcas]
12 Hb_013818_060 0.2979284822 - - Brassinosteroid LRR receptor kinase precursor, putative [Ricinus communis]
13 Hb_000120_650 0.2986251168 - - PREDICTED: proton-coupled amino acid transporter 3 [Jatropha curcas]
14 Hb_004871_050 0.2998169538 - - hypothetical protein F383_22684 [Gossypium arboreum]
15 Hb_001512_020 0.3033820497 - - PREDICTED: GDSL esterase/lipase At5g14450 [Jatropha curcas]
16 Hb_001004_040 0.3038598248 - - conserved hypothetical protein [Ricinus communis]
17 Hb_007590_060 0.3077540659 - - -
18 Hb_011360_080 0.3083805095 transcription factor TF Family: C2H2 zinc finger protein, putative [Ricinus communis]
19 Hb_000130_370 0.3088013701 - - PREDICTED: uncharacterized protein LOC105635737 [Jatropha curcas]
20 Hb_020096_020 0.311007524 - - -

Gene co-expression network

sample Hb_028977_020 Hb_028977_020 Hb_002073_140 Hb_002073_140 Hb_028977_020--Hb_002073_140 Hb_000120_120 Hb_000120_120 Hb_028977_020--Hb_000120_120 Hb_150651_050 Hb_150651_050 Hb_028977_020--Hb_150651_050 Hb_027892_010 Hb_027892_010 Hb_028977_020--Hb_027892_010 Hb_000249_090 Hb_000249_090 Hb_028977_020--Hb_000249_090 Hb_001267_030 Hb_001267_030 Hb_028977_020--Hb_001267_030 Hb_004162_100 Hb_004162_100 Hb_002073_140--Hb_004162_100 Hb_002073_140--Hb_150651_050 Hb_000345_040 Hb_000345_040 Hb_002073_140--Hb_000345_040 Hb_004077_030 Hb_004077_030 Hb_002073_140--Hb_004077_030 Hb_003030_080 Hb_003030_080 Hb_002073_140--Hb_003030_080 Hb_013818_060 Hb_013818_060 Hb_000120_120--Hb_013818_060 Hb_000120_120--Hb_027892_010 Hb_000249_130 Hb_000249_130 Hb_000120_120--Hb_000249_130 Hb_000120_650 Hb_000120_650 Hb_000120_120--Hb_000120_650 Hb_004871_050 Hb_004871_050 Hb_000120_120--Hb_004871_050 Hb_000120_120--Hb_000249_090 Hb_001004_040 Hb_001004_040 Hb_150651_050--Hb_001004_040 Hb_004800_160 Hb_004800_160 Hb_150651_050--Hb_004800_160 Hb_150651_050--Hb_000120_120 Hb_150651_050--Hb_003030_080 Hb_002739_110 Hb_002739_110 Hb_150651_050--Hb_002739_110 Hb_024952_010 Hb_024952_010 Hb_150651_050--Hb_024952_010 Hb_027892_010--Hb_000249_090 Hb_027892_010--Hb_000120_650 Hb_004705_030 Hb_004705_030 Hb_027892_010--Hb_004705_030 Hb_027892_010--Hb_000249_130 Hb_027892_010--Hb_013818_060 Hb_000249_090--Hb_000120_650 Hb_000249_090--Hb_013818_060 Hb_000249_090--Hb_004705_030 Hb_004048_050 Hb_004048_050 Hb_000249_090--Hb_004048_050 Hb_002685_090 Hb_002685_090 Hb_000249_090--Hb_002685_090 Hb_000141_240 Hb_000141_240 Hb_001267_030--Hb_000141_240 Hb_018954_010 Hb_018954_010 Hb_001267_030--Hb_018954_010 Hb_017124_020 Hb_017124_020 Hb_001267_030--Hb_017124_020 Hb_001267_030--Hb_000120_120 Hb_001799_080 Hb_001799_080 Hb_001267_030--Hb_001799_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.015423 0 0 0.00581444 0.0077198 0.00724607
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0175012 0 0.0525168 0.00546837 0

CAGE analysis