Hb_001267_030

Information

Type -
Description -
Location Contig1267: 65588-68932
Sequence    

Annotation

kegg
ID brp:103868780
description uncharacterized LOC103868780
nr
ID CAN84067.1
description hypothetical protein VITISV_041979 [Vitis vinifera]
swissprot
ID Q7LHG5
description Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TY3B-I PE=3 SV=2
trembl
ID A5C8A9
description Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_041979 PE=4 SV=1
Gene Ontology
ID GO:0003676
description gag-pol identical

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001267_030 0.0 - - hypothetical protein VITISV_041979 [Vitis vinifera]
2 Hb_000141_240 0.268519833 - - PREDICTED: protein NRT1/ PTR FAMILY 6.3 isoform X1 [Jatropha curcas]
3 Hb_018954_010 0.2792842959 - - -
4 Hb_017124_020 0.2814087914 - - hypothetical protein PRUPE_ppa015539mg [Prunus persica]
5 Hb_028977_020 0.2860486258 - - hypothetical protein JCGZ_21319 [Jatropha curcas]
6 Hb_000120_120 0.2972410871 - - PREDICTED: phosphoinositide phospholipase C 2 [Jatropha curcas]
7 Hb_001799_080 0.3106665928 - - Flavonol synthase/flavanone 3-hydroxylase, putative [Ricinus communis]
8 Hb_000972_010 0.317684609 - - PREDICTED: kinesin KP1 [Jatropha curcas]
9 Hb_001534_170 0.3194106322 - - Uncharacterized protein TCM_038456 [Theobroma cacao]
10 Hb_021156_030 0.3206265112 - - hypothetical protein JCGZ_18422 [Jatropha curcas]
11 Hb_100873_030 0.3283681438 - - PREDICTED: uncharacterized protein LOC105795653 [Gossypium raimondii]
12 Hb_006355_050 0.3288110669 - - -
13 Hb_004871_050 0.3302051006 - - hypothetical protein F383_22684 [Gossypium arboreum]
14 Hb_004460_010 0.3365320326 - - PREDICTED: SKI/DACH domain-containing protein 1-like [Jatropha curcas]
15 Hb_013818_060 0.3396430641 - - Brassinosteroid LRR receptor kinase precursor, putative [Ricinus communis]
16 Hb_027892_010 0.3462271773 transcription factor TF Family: bHLH LMYC1 [Hevea brasiliensis]
17 Hb_000120_650 0.3462318252 - - PREDICTED: proton-coupled amino acid transporter 3 [Jatropha curcas]
18 Hb_088538_020 0.3471918103 - - hypothetical protein JCGZ_12178 [Jatropha curcas]
19 Hb_001638_210 0.3536496697 - - conserved hypothetical protein [Ricinus communis]
20 Hb_042211_010 0.3570185241 - - PREDICTED: uncharacterized protein LOC103404019 [Malus domestica]

Gene co-expression network

sample Hb_001267_030 Hb_001267_030 Hb_000141_240 Hb_000141_240 Hb_001267_030--Hb_000141_240 Hb_018954_010 Hb_018954_010 Hb_001267_030--Hb_018954_010 Hb_017124_020 Hb_017124_020 Hb_001267_030--Hb_017124_020 Hb_028977_020 Hb_028977_020 Hb_001267_030--Hb_028977_020 Hb_000120_120 Hb_000120_120 Hb_001267_030--Hb_000120_120 Hb_001799_080 Hb_001799_080 Hb_001267_030--Hb_001799_080 Hb_100873_030 Hb_100873_030 Hb_000141_240--Hb_100873_030 Hb_000141_240--Hb_018954_010 Hb_000172_570 Hb_000172_570 Hb_000141_240--Hb_000172_570 Hb_002073_120 Hb_002073_120 Hb_000141_240--Hb_002073_120 Hb_000009_070 Hb_000009_070 Hb_000141_240--Hb_000009_070 Hb_000995_070 Hb_000995_070 Hb_000141_240--Hb_000995_070 Hb_018954_010--Hb_100873_030 Hb_000972_010 Hb_000972_010 Hb_018954_010--Hb_000972_010 Hb_001534_170 Hb_001534_170 Hb_018954_010--Hb_001534_170 Hb_018954_010--Hb_017124_020 Hb_018954_010--Hb_000995_070 Hb_000120_650 Hb_000120_650 Hb_017124_020--Hb_000120_650 Hb_004871_050 Hb_004871_050 Hb_017124_020--Hb_004871_050 Hb_017124_020--Hb_000972_010 Hb_000567_250 Hb_000567_250 Hb_017124_020--Hb_000567_250 Hb_027892_010 Hb_027892_010 Hb_017124_020--Hb_027892_010 Hb_000249_090 Hb_000249_090 Hb_017124_020--Hb_000249_090 Hb_002073_140 Hb_002073_140 Hb_028977_020--Hb_002073_140 Hb_028977_020--Hb_000120_120 Hb_150651_050 Hb_150651_050 Hb_028977_020--Hb_150651_050 Hb_028977_020--Hb_027892_010 Hb_028977_020--Hb_000249_090 Hb_013818_060 Hb_013818_060 Hb_000120_120--Hb_013818_060 Hb_000120_120--Hb_027892_010 Hb_000249_130 Hb_000249_130 Hb_000120_120--Hb_000249_130 Hb_000120_120--Hb_000120_650 Hb_000120_120--Hb_004871_050 Hb_000120_120--Hb_000249_090 Hb_004460_010 Hb_004460_010 Hb_001799_080--Hb_004460_010 Hb_001799_080--Hb_000120_120 Hb_000637_120 Hb_000637_120 Hb_001799_080--Hb_000637_120 Hb_001799_080--Hb_013818_060 Hb_020096_020 Hb_020096_020 Hb_001799_080--Hb_020096_020 Hb_008014_070 Hb_008014_070 Hb_001799_080--Hb_008014_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0136475 0 0 0 0.0102962 0.010698
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0250098 0 0.148869 0 0

CAGE analysis