Hb_150651_050

Information

Type -
Description -
Location Contig150651: 26055-31211
Sequence    

Annotation

kegg
ID rcu:RCOM_1034140
description phosphoglycerate mutase, putative (EC:5.4.2.1)
nr
ID XP_002513886.1
description phosphoglycerate mutase, putative [Ricinus communis]
swissprot
ID Q6MEW4
description 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase OS=Protochlamydia amoebophila (strain UWE25) GN=gpmA PE=3 SV=1
trembl
ID B9RJG7
description Phosphoglycerate mutase, putative OS=Ricinus communis GN=RCOM_1034140 PE=3 SV=1
Gene Ontology
ID GO:0004619
description phosphoglycerate mutase-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_12695: 30150-30883 , PASA_asmbl_12696: 30151-30331
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_150651_050 0.0 - - phosphoglycerate mutase, putative [Ricinus communis]
2 Hb_001004_040 0.1458781895 - - conserved hypothetical protein [Ricinus communis]
3 Hb_004800_160 0.172233999 - - Uncharacterized protein TCM_000403 [Theobroma cacao]
4 Hb_000120_120 0.1806128634 - - PREDICTED: phosphoinositide phospholipase C 2 [Jatropha curcas]
5 Hb_003030_080 0.1815895409 - - multidrug resistance pump, putative [Ricinus communis]
6 Hb_002739_110 0.1828666595 - - PREDICTED: ribosomal RNA processing protein 1 homolog [Jatropha curcas]
7 Hb_024952_010 0.1844034114 - - PREDICTED: rop guanine nucleotide exchange factor 1 [Jatropha curcas]
8 Hb_000249_130 0.1891644395 - - hypothetical protein RCOM_0254640 [Ricinus communis]
9 Hb_000479_330 0.1892217166 - - PREDICTED: uncharacterized protein LOC105644113 isoform X1 [Jatropha curcas]
10 Hb_000025_480 0.1892510421 transcription factor TF Family: HB PREDICTED: homeobox protein 10 isoform X1 [Jatropha curcas]
11 Hb_152439_020 0.1899179791 - - PREDICTED: copper-transporting ATPase RAN1 isoform X1 [Jatropha curcas]
12 Hb_001141_470 0.1904534945 - - PREDICTED: uncharacterized protein LOC101254423 [Solanum lycopersicum]
13 Hb_002073_140 0.1908365031 - - -
14 Hb_002903_090 0.1913562219 - - sugar transporter, putative [Ricinus communis]
15 Hb_000094_130 0.1921816717 - - PREDICTED: random slug protein 5 [Jatropha curcas]
16 Hb_000221_270 0.1932173447 - - hypothetical protein JCGZ_15813 [Jatropha curcas]
17 Hb_000380_180 0.1941612365 - - kinase, putative [Ricinus communis]
18 Hb_010710_030 0.1972810685 transcription factor TF Family: G2-like PREDICTED: transcription factor LUX [Jatropha curcas]
19 Hb_000110_160 0.1978334498 - - conserved hypothetical protein [Ricinus communis]
20 Hb_170193_010 0.1978337089 - - JHL25H03.10 [Jatropha curcas]

Gene co-expression network

sample Hb_150651_050 Hb_150651_050 Hb_001004_040 Hb_001004_040 Hb_150651_050--Hb_001004_040 Hb_004800_160 Hb_004800_160 Hb_150651_050--Hb_004800_160 Hb_000120_120 Hb_000120_120 Hb_150651_050--Hb_000120_120 Hb_003030_080 Hb_003030_080 Hb_150651_050--Hb_003030_080 Hb_002739_110 Hb_002739_110 Hb_150651_050--Hb_002739_110 Hb_024952_010 Hb_024952_010 Hb_150651_050--Hb_024952_010 Hb_001004_040--Hb_002739_110 Hb_000380_180 Hb_000380_180 Hb_001004_040--Hb_000380_180 Hb_085863_020 Hb_085863_020 Hb_001004_040--Hb_085863_020 Hb_000025_480 Hb_000025_480 Hb_001004_040--Hb_000025_480 Hb_000249_130 Hb_000249_130 Hb_001004_040--Hb_000249_130 Hb_000861_040 Hb_000861_040 Hb_004800_160--Hb_000861_040 Hb_005357_150 Hb_005357_150 Hb_004800_160--Hb_005357_150 Hb_004800_160--Hb_000025_480 Hb_010402_010 Hb_010402_010 Hb_004800_160--Hb_010402_010 Hb_000427_030 Hb_000427_030 Hb_004800_160--Hb_000427_030 Hb_001981_090 Hb_001981_090 Hb_004800_160--Hb_001981_090 Hb_013818_060 Hb_013818_060 Hb_000120_120--Hb_013818_060 Hb_027892_010 Hb_027892_010 Hb_000120_120--Hb_027892_010 Hb_000120_120--Hb_000249_130 Hb_000120_650 Hb_000120_650 Hb_000120_120--Hb_000120_650 Hb_004871_050 Hb_004871_050 Hb_000120_120--Hb_004871_050 Hb_000249_090 Hb_000249_090 Hb_000120_120--Hb_000249_090 Hb_001606_070 Hb_001606_070 Hb_003030_080--Hb_001606_070 Hb_003030_080--Hb_000249_130 Hb_001396_230 Hb_001396_230 Hb_003030_080--Hb_001396_230 Hb_003497_030 Hb_003497_030 Hb_003030_080--Hb_003497_030 Hb_000849_040 Hb_000849_040 Hb_003030_080--Hb_000849_040 Hb_005779_100 Hb_005779_100 Hb_003030_080--Hb_005779_100 Hb_002739_110--Hb_001396_230 Hb_002739_110--Hb_000380_180 Hb_152439_020 Hb_152439_020 Hb_002739_110--Hb_152439_020 Hb_002739_110--Hb_000249_130 Hb_008085_040 Hb_008085_040 Hb_002739_110--Hb_008085_040 Hb_024952_010--Hb_001396_230 Hb_024952_010--Hb_001606_070 Hb_024952_010--Hb_005779_100 Hb_001153_220 Hb_001153_220 Hb_024952_010--Hb_001153_220 Hb_002352_010 Hb_002352_010 Hb_024952_010--Hb_002352_010 Hb_024952_010--Hb_000861_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
11.4737 0.250577 0.884575 1.75464 5.68464 6.88409
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.66838 3.02422 22.2912 6.68969 0.965237

CAGE analysis