Hb_005539_120

Information

Type -
Description -
Location Contig5539: 79951-82512
Sequence    

Annotation

kegg
ID rcu:RCOM_0527630
description serine-threonine protein kinase, plant-type, putative
nr
ID XP_012085859.1
description PREDICTED: probable LRR receptor-like protein kinase At1g51890 [Jatropha curcas]
swissprot
ID Q9SJG2
description Probable receptor-like protein kinase At2g42960 OS=Arabidopsis thaliana GN=At2g42960 PE=3 SV=1
trembl
ID B9SH77
description Serine-threonine protein kinase, plant-type, putative OS=Ricinus communis GN=RCOM_0527630 PE=4 SV=1
Gene Ontology
ID GO:0004672
description proline-rich receptor-like protein kinase perk3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005539_120 0.0 - - PREDICTED: probable LRR receptor-like protein kinase At1g51890 [Jatropha curcas]
2 Hb_014430_010 0.2437348286 - - PREDICTED: chaperone protein dnaJ 11, chloroplastic-like [Jatropha curcas]
3 Hb_000130_450 0.3175629475 - - conserved hypothetical protein [Ricinus communis]
4 Hb_002259_010 0.3519896048 - - conserved hypothetical protein [Ricinus communis]
5 Hb_001195_540 0.3558320076 - - PREDICTED: J domain-containing protein required for chloroplast accumulation response 1 [Jatropha curcas]
6 Hb_002382_020 0.3755642628 - - PREDICTED: 3beta-hydroxysteroid-dehydrogenase/decarboxylase isoform 2 [Jatropha curcas]
7 Hb_000181_190 0.3773836377 - - PREDICTED: probable protein phosphatase 2C 39 [Jatropha curcas]
8 Hb_000027_040 0.3794667451 - - PREDICTED: uncharacterized protein LOC105636980 [Jatropha curcas]
9 Hb_005615_050 0.3875125775 - - PREDICTED: uncharacterized protein LOC105636967 [Jatropha curcas]
10 Hb_000200_200 0.3885530554 - - PREDICTED: putative zinc finger protein At1g68190 isoform X2 [Jatropha curcas]
11 Hb_002026_010 0.3948567287 transcription factor TF Family: mTERF hypothetical protein CICLE_v10020375mg [Citrus clementina]
12 Hb_014720_010 0.3958299603 - - conserved hypothetical protein [Ricinus communis]
13 Hb_004052_010 0.3991899501 - - PREDICTED: ninja-family protein AFP3-like isoform X2 [Jatropha curcas]
14 Hb_089889_010 0.400425384 - - PREDICTED: RING finger and CHY zinc finger domain-containing protein 1 [Jatropha curcas]
15 Hb_005656_190 0.4005459818 - - proteasome subunit beta type 6,9, putative [Ricinus communis]
16 Hb_165404_020 0.4022443432 - - hypothetical protein JCGZ_17789 [Jatropha curcas]
17 Hb_001623_320 0.4024695427 - - PREDICTED: heavy metal-associated isoprenylated plant protein 26 isoform X1 [Populus euphratica]
18 Hb_000322_190 0.4028468356 - - -
19 Hb_032208_020 0.4029690609 - - hypothetical protein JCGZ_01894 [Jatropha curcas]
20 Hb_001332_030 0.4046651676 - - hypothetical protein JCGZ_21111 [Jatropha curcas]

Gene co-expression network

sample Hb_005539_120 Hb_005539_120 Hb_014430_010 Hb_014430_010 Hb_005539_120--Hb_014430_010 Hb_000130_450 Hb_000130_450 Hb_005539_120--Hb_000130_450 Hb_002259_010 Hb_002259_010 Hb_005539_120--Hb_002259_010 Hb_001195_540 Hb_001195_540 Hb_005539_120--Hb_001195_540 Hb_002382_020 Hb_002382_020 Hb_005539_120--Hb_002382_020 Hb_000181_190 Hb_000181_190 Hb_005539_120--Hb_000181_190 Hb_014430_010--Hb_000130_450 Hb_014720_010 Hb_014720_010 Hb_014430_010--Hb_014720_010 Hb_014430_010--Hb_000181_190 Hb_000878_140 Hb_000878_140 Hb_014430_010--Hb_000878_140 Hb_089889_010 Hb_089889_010 Hb_014430_010--Hb_089889_010 Hb_000200_200 Hb_000200_200 Hb_000130_450--Hb_000200_200 Hb_000130_450--Hb_014720_010 Hb_005375_050 Hb_005375_050 Hb_000130_450--Hb_005375_050 Hb_000008_380 Hb_000008_380 Hb_000130_450--Hb_000008_380 Hb_005656_190 Hb_005656_190 Hb_000130_450--Hb_005656_190 Hb_000027_040 Hb_000027_040 Hb_000130_450--Hb_000027_040 Hb_002259_010--Hb_001195_540 Hb_000803_130 Hb_000803_130 Hb_002259_010--Hb_000803_130 Hb_052764_040 Hb_052764_040 Hb_002259_010--Hb_052764_040 Hb_002733_010 Hb_002733_010 Hb_002259_010--Hb_002733_010 Hb_000011_090 Hb_000011_090 Hb_002259_010--Hb_000011_090 Hb_001087_020 Hb_001087_020 Hb_001195_540--Hb_001087_020 Hb_001512_020 Hb_001512_020 Hb_001195_540--Hb_001512_020 Hb_007904_140 Hb_007904_140 Hb_001195_540--Hb_007904_140 Hb_008768_030 Hb_008768_030 Hb_001195_540--Hb_008768_030 Hb_000010_450 Hb_000010_450 Hb_002382_020--Hb_000010_450 Hb_000264_120 Hb_000264_120 Hb_002382_020--Hb_000264_120 Hb_002157_200 Hb_002157_200 Hb_002382_020--Hb_002157_200 Hb_000019_090 Hb_000019_090 Hb_002382_020--Hb_000019_090 Hb_057597_020 Hb_057597_020 Hb_002382_020--Hb_057597_020 Hb_001396_060 Hb_001396_060 Hb_002382_020--Hb_001396_060 Hb_000181_190--Hb_000264_120 Hb_000181_190--Hb_005375_050 Hb_000349_190 Hb_000349_190 Hb_000181_190--Hb_000349_190 Hb_036790_030 Hb_036790_030 Hb_000181_190--Hb_036790_030 Hb_004116_100 Hb_004116_100 Hb_000181_190--Hb_004116_100 Hb_002307_020 Hb_002307_020 Hb_000181_190--Hb_002307_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.0555338 0 0 0.0120555
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0278325 0.0218977 0.041291 0 0

CAGE analysis