Hb_001087_020

Information

Type -
Description -
Location Contig1087: 22764-24516
Sequence    

Annotation

kegg
ID rcu:RCOM_0878400
description Phytoene synthase, chloroplast precursor, putative
nr
ID XP_012085035.1
description PREDICTED: phytoene synthase 2, chloroplastic-like [Jatropha curcas]
swissprot
ID P37272
description Bifunctional 15-cis-phytoene synthase, chromoplast OS=Capsicum annuum GN=PSY1 PE=1 SV=1
trembl
ID A0A067K549
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21037 PE=4 SV=1
Gene Ontology
ID GO:0009536
description phytoene synthase chloroplastic-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001087_020 0.0 - - PREDICTED: phytoene synthase 2, chloroplastic-like [Jatropha curcas]
2 Hb_000032_300 0.3046967417 - - hypothetical protein JCGZ_20455 [Jatropha curcas]
3 Hb_001195_540 0.3054531504 - - PREDICTED: J domain-containing protein required for chloroplast accumulation response 1 [Jatropha curcas]
4 Hb_001512_020 0.3138182868 - - PREDICTED: GDSL esterase/lipase At5g14450 [Jatropha curcas]
5 Hb_007904_140 0.3522250924 - - -
6 Hb_100804_010 0.359801714 - - BAHD family acyltransferase, clade V, putative [Theobroma cacao]
7 Hb_000085_080 0.3666710062 - - PREDICTED: phosphatidate cytidylyltransferase 1 [Jatropha curcas]
8 Hb_000690_070 0.3792462394 - - -
9 Hb_001267_030 0.3857182439 - - hypothetical protein VITISV_041979 [Vitis vinifera]
10 Hb_028977_020 0.3881007041 - - hypothetical protein JCGZ_21319 [Jatropha curcas]
11 Hb_000712_050 0.3944459599 - - PREDICTED: inositol oxygenase 1-like isoform X1 [Citrus sinensis]
12 Hb_000094_130 0.3947368512 - - PREDICTED: random slug protein 5 [Jatropha curcas]
13 Hb_003177_120 0.3964461592 - - PREDICTED: disease resistance protein At4g27190-like [Populus euphratica]
14 Hb_001623_320 0.3995729021 - - PREDICTED: heavy metal-associated isoprenylated plant protein 26 isoform X1 [Populus euphratica]
15 Hb_010710_050 0.4007350005 - - -
16 Hb_000130_370 0.4031528191 - - PREDICTED: uncharacterized protein LOC105635737 [Jatropha curcas]
17 Hb_024952_010 0.4057030535 - - PREDICTED: rop guanine nucleotide exchange factor 1 [Jatropha curcas]
18 Hb_008768_030 0.4060099011 - - -
19 Hb_023292_010 0.4069218102 - - Cucumisin precursor, putative [Ricinus communis]
20 Hb_000436_080 0.412218363 - - unnamed protein product [Coffea canephora]

Gene co-expression network

sample Hb_001087_020 Hb_001087_020 Hb_000032_300 Hb_000032_300 Hb_001087_020--Hb_000032_300 Hb_001195_540 Hb_001195_540 Hb_001087_020--Hb_001195_540 Hb_001512_020 Hb_001512_020 Hb_001087_020--Hb_001512_020 Hb_007904_140 Hb_007904_140 Hb_001087_020--Hb_007904_140 Hb_100804_010 Hb_100804_010 Hb_001087_020--Hb_100804_010 Hb_000085_080 Hb_000085_080 Hb_001087_020--Hb_000085_080 Hb_004650_020 Hb_004650_020 Hb_000032_300--Hb_004650_020 Hb_011640_020 Hb_011640_020 Hb_000032_300--Hb_011640_020 Hb_000457_160 Hb_000457_160 Hb_000032_300--Hb_000457_160 Hb_032006_010 Hb_032006_010 Hb_000032_300--Hb_032006_010 Hb_000907_100 Hb_000907_100 Hb_000032_300--Hb_000907_100 Hb_002259_010 Hb_002259_010 Hb_001195_540--Hb_002259_010 Hb_001195_540--Hb_001512_020 Hb_001195_540--Hb_007904_140 Hb_005539_120 Hb_005539_120 Hb_001195_540--Hb_005539_120 Hb_008768_030 Hb_008768_030 Hb_001195_540--Hb_008768_030 Hb_004052_010 Hb_004052_010 Hb_001512_020--Hb_004052_010 Hb_028977_020 Hb_028977_020 Hb_001512_020--Hb_028977_020 Hb_001238_050 Hb_001238_050 Hb_001512_020--Hb_001238_050 Hb_000094_130 Hb_000094_130 Hb_001512_020--Hb_000094_130 Hb_007904_140--Hb_008768_030 Hb_110559_010 Hb_110559_010 Hb_007904_140--Hb_110559_010 Hb_001357_070 Hb_001357_070 Hb_007904_140--Hb_001357_070 Hb_062562_010 Hb_062562_010 Hb_007904_140--Hb_062562_010 Hb_000521_010 Hb_000521_010 Hb_007904_140--Hb_000521_010 Hb_144451_010 Hb_144451_010 Hb_007904_140--Hb_144451_010 Hb_023292_010 Hb_023292_010 Hb_100804_010--Hb_023292_010 Hb_001073_050 Hb_001073_050 Hb_100804_010--Hb_001073_050 Hb_006472_050 Hb_006472_050 Hb_100804_010--Hb_006472_050 Hb_001153_220 Hb_001153_220 Hb_100804_010--Hb_001153_220 Hb_001357_080 Hb_001357_080 Hb_100804_010--Hb_001357_080 Hb_000363_160 Hb_000363_160 Hb_100804_010--Hb_000363_160 Hb_004553_020 Hb_004553_020 Hb_000085_080--Hb_004553_020 Hb_000085_080--Hb_100804_010 Hb_001662_060 Hb_001662_060 Hb_000085_080--Hb_001662_060 Hb_011316_020 Hb_011316_020 Hb_000085_080--Hb_011316_020 Hb_000436_080 Hb_000436_080 Hb_000085_080--Hb_000436_080 Hb_007765_020 Hb_007765_020 Hb_000085_080--Hb_007765_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.0133601 0.0139028 0.0158888 0.052883
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0387174 0 0.113537 0 0

CAGE analysis