Hb_004650_020

Information

Type -
Description -
Location Contig4650: 25873-26614
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004650_020 0.0 - - -
2 Hb_002983_020 0.1780188353 - - PREDICTED: probable disease resistance protein At5g63020 [Populus euphratica]
3 Hb_001767_010 0.188550834 - - PREDICTED: probable RNA helicase SDE3 [Populus euphratica]
4 Hb_001102_110 0.1993503413 - - PREDICTED: xyloglucan galactosyltransferase KATAMARI1-like [Jatropha curcas]
5 Hb_004884_060 0.2082158708 transcription factor TF Family: G2-like PREDICTED: putative Myb family transcription factor At1g14600 [Jatropha curcas]
6 Hb_000380_180 0.2119341228 - - kinase, putative [Ricinus communis]
7 Hb_019153_040 0.2119782236 rubber biosynthesis Gene Name: 1-deoxy-D-xylulose-5-phosphate synthase putative 1-deoxy-D-xylulose 5-phosphate synthase [Hevea brasiliensis]
8 Hb_000249_110 0.2138664863 - - hypothetical protein JCGZ_22462 [Jatropha curcas]
9 Hb_003125_050 0.2146220598 - - PREDICTED: pentatricopeptide repeat-containing protein At5g50390, chloroplastic [Jatropha curcas]
10 Hb_003001_030 0.2177058211 - - PREDICTED: putative G3BP-like protein [Jatropha curcas]
11 Hb_011640_020 0.2180182244 - - hypothetical protein VITISV_036432 [Vitis vinifera]
12 Hb_000976_010 0.2241188956 transcription factor TF Family: LOB PREDICTED: LOB domain-containing protein 4 [Jatropha curcas]
13 Hb_000907_100 0.2247645557 transcription factor TF Family: zf-HD hypothetical protein POPTR_0012s03770g, partial [Populus trichocarpa]
14 Hb_005227_070 0.2253911752 - - serine/threonine protein kinase, putative [Ricinus communis]
15 Hb_000086_220 0.2260722498 - - -
16 Hb_114684_020 0.2273021401 - - beta-1,3-glucanase [Hevea brasiliensis]
17 Hb_003906_110 0.230940766 - - PREDICTED: molybdenum cofactor sulfurase [Jatropha curcas]
18 Hb_000038_030 0.2312837855 - - PREDICTED: probable alpha,alpha-trehalose-phosphate synthase [UDP-forming] 7-like [Glycine max]
19 Hb_002038_060 0.2315040932 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC100265010 [Vitis vinifera]
20 Hb_034083_010 0.2335824818 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_004650_020 Hb_004650_020 Hb_002983_020 Hb_002983_020 Hb_004650_020--Hb_002983_020 Hb_001767_010 Hb_001767_010 Hb_004650_020--Hb_001767_010 Hb_001102_110 Hb_001102_110 Hb_004650_020--Hb_001102_110 Hb_004884_060 Hb_004884_060 Hb_004650_020--Hb_004884_060 Hb_000380_180 Hb_000380_180 Hb_004650_020--Hb_000380_180 Hb_019153_040 Hb_019153_040 Hb_004650_020--Hb_019153_040 Hb_009680_030 Hb_009680_030 Hb_002983_020--Hb_009680_030 Hb_002983_020--Hb_019153_040 Hb_000300_530 Hb_000300_530 Hb_002983_020--Hb_000300_530 Hb_003125_050 Hb_003125_050 Hb_002983_020--Hb_003125_050 Hb_010931_110 Hb_010931_110 Hb_002983_020--Hb_010931_110 Hb_053543_010 Hb_053543_010 Hb_002983_020--Hb_053543_010 Hb_114684_020 Hb_114684_020 Hb_001767_010--Hb_114684_020 Hb_000427_030 Hb_000427_030 Hb_001767_010--Hb_000427_030 Hb_011174_070 Hb_011174_070 Hb_001767_010--Hb_011174_070 Hb_003001_030 Hb_003001_030 Hb_001767_010--Hb_003001_030 Hb_000249_110 Hb_000249_110 Hb_001767_010--Hb_000249_110 Hb_001767_010--Hb_000380_180 Hb_176022_020 Hb_176022_020 Hb_001102_110--Hb_176022_020 Hb_004156_060 Hb_004156_060 Hb_001102_110--Hb_004156_060 Hb_012055_020 Hb_012055_020 Hb_001102_110--Hb_012055_020 Hb_001102_110--Hb_004884_060 Hb_003656_030 Hb_003656_030 Hb_001102_110--Hb_003656_030 Hb_040996_010 Hb_040996_010 Hb_001102_110--Hb_040996_010 Hb_003906_110 Hb_003906_110 Hb_004884_060--Hb_003906_110 Hb_004884_060--Hb_000249_110 Hb_000907_100 Hb_000907_100 Hb_004884_060--Hb_000907_100 Hb_002989_080 Hb_002989_080 Hb_004884_060--Hb_002989_080 Hb_007178_010 Hb_007178_010 Hb_004884_060--Hb_007178_010 Hb_002843_160 Hb_002843_160 Hb_004884_060--Hb_002843_160 Hb_003497_030 Hb_003497_030 Hb_000380_180--Hb_003497_030 Hb_000380_180--Hb_000427_030 Hb_000260_060 Hb_000260_060 Hb_000380_180--Hb_000260_060 Hb_002739_110 Hb_002739_110 Hb_000380_180--Hb_002739_110 Hb_000249_130 Hb_000249_130 Hb_000380_180--Hb_000249_130 Hb_164732_010 Hb_164732_010 Hb_019153_040--Hb_164732_010 Hb_004032_240 Hb_004032_240 Hb_019153_040--Hb_004032_240 Hb_019153_040--Hb_009680_030 Hb_019153_040--Hb_010931_110 Hb_008376_010 Hb_008376_010 Hb_019153_040--Hb_008376_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.16557 0 0 0 0.516435 0.368416
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.191954 0.0754349 0.530346 0.0308744 0

CAGE analysis