Hb_001102_110

Information

Type -
Description -
Location Contig1102: 105920-110922
Sequence    

Annotation

kegg
ID fve:101299327
description xyloglucan galactosyltransferase KATAMARI1-like
nr
ID XP_012087596.1
description PREDICTED: xyloglucan galactosyltransferase KATAMARI1-like [Jatropha curcas]
swissprot
ID Q39224
description Protein SRG1 OS=Arabidopsis thaliana GN=SRG1 PE=2 SV=1
trembl
ID A0A061DW99
description Exostosin family protein OS=Theobroma cacao GN=TCM_006099 PE=4 SV=1
Gene Ontology
ID GO:0016757
description xyloglucan galactosyltransferase katamari1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_03142: 108017-109279
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001102_110 0.0 - - PREDICTED: xyloglucan galactosyltransferase KATAMARI1-like [Jatropha curcas]
2 Hb_176022_020 0.1068882019 - - cytochrome P450, putative [Ricinus communis]
3 Hb_004156_060 0.1168703291 - - neutral/alkaline invertase 1 [Hevea brasiliensis]
4 Hb_012055_020 0.1215474352 - - PREDICTED: metal transporter Nramp3 [Jatropha curcas]
5 Hb_004884_060 0.1228613989 transcription factor TF Family: G2-like PREDICTED: putative Myb family transcription factor At1g14600 [Jatropha curcas]
6 Hb_003656_030 0.1263747919 - - PREDICTED: mechanosensitive ion channel protein 8-like [Jatropha curcas]
7 Hb_040996_010 0.1289623216 - - PREDICTED: LOW QUALITY PROTEIN: helicase SEN1-like [Jatropha curcas]
8 Hb_019613_020 0.1297338265 - - phospholipase C, putative [Ricinus communis]
9 Hb_000208_290 0.1333682071 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 2 isoform X2 [Jatropha curcas]
10 Hb_000208_240 0.1336733192 - - PREDICTED: uncharacterized protein LOC105631307 [Jatropha curcas]
11 Hb_000088_040 0.1372353396 - - PREDICTED: multiple C2 and transmembrane domain-containing protein 2 [Jatropha curcas]
12 Hb_011021_030 0.1398117698 - - PREDICTED: uncharacterized protein LOC105644390 [Jatropha curcas]
13 Hb_000249_110 0.1438947641 - - hypothetical protein JCGZ_22462 [Jatropha curcas]
14 Hb_005227_070 0.1468416598 - - serine/threonine protein kinase, putative [Ricinus communis]
15 Hb_000300_530 0.1481746343 - - PREDICTED: uncharacterized protein DDB_G0286299-like [Gossypium raimondii]
16 Hb_005488_070 0.1504753176 - - putative cytochrome P450 [Oryza sativa Japonica Group]
17 Hb_000005_050 0.1508631119 - - PREDICTED: uncharacterized protein LOC105627993 [Jatropha curcas]
18 Hb_034083_010 0.1511038308 - - conserved hypothetical protein [Ricinus communis]
19 Hb_003404_030 0.154982349 - - PREDICTED: monogalactosyldiacylglycerol synthase 2, chloroplastic-like isoform X1 [Jatropha curcas]
20 Hb_003906_110 0.1557934617 - - PREDICTED: molybdenum cofactor sulfurase [Jatropha curcas]

Gene co-expression network

sample Hb_001102_110 Hb_001102_110 Hb_176022_020 Hb_176022_020 Hb_001102_110--Hb_176022_020 Hb_004156_060 Hb_004156_060 Hb_001102_110--Hb_004156_060 Hb_012055_020 Hb_012055_020 Hb_001102_110--Hb_012055_020 Hb_004884_060 Hb_004884_060 Hb_001102_110--Hb_004884_060 Hb_003656_030 Hb_003656_030 Hb_001102_110--Hb_003656_030 Hb_040996_010 Hb_040996_010 Hb_001102_110--Hb_040996_010 Hb_003404_030 Hb_003404_030 Hb_176022_020--Hb_003404_030 Hb_019613_020 Hb_019613_020 Hb_176022_020--Hb_019613_020 Hb_176022_020--Hb_012055_020 Hb_000088_040 Hb_000088_040 Hb_176022_020--Hb_000088_040 Hb_176022_020--Hb_040996_010 Hb_000005_050 Hb_000005_050 Hb_176022_020--Hb_000005_050 Hb_154381_050 Hb_154381_050 Hb_004156_060--Hb_154381_050 Hb_000208_290 Hb_000208_290 Hb_004156_060--Hb_000208_290 Hb_006029_010 Hb_006029_010 Hb_004156_060--Hb_006029_010 Hb_000230_110 Hb_000230_110 Hb_004156_060--Hb_000230_110 Hb_004156_060--Hb_176022_020 Hb_004156_060--Hb_012055_020 Hb_005227_070 Hb_005227_070 Hb_012055_020--Hb_005227_070 Hb_000984_180 Hb_000984_180 Hb_012055_020--Hb_000984_180 Hb_034083_010 Hb_034083_010 Hb_012055_020--Hb_034083_010 Hb_012055_020--Hb_000230_110 Hb_073171_110 Hb_073171_110 Hb_012055_020--Hb_073171_110 Hb_003906_110 Hb_003906_110 Hb_004884_060--Hb_003906_110 Hb_000249_110 Hb_000249_110 Hb_004884_060--Hb_000249_110 Hb_000907_100 Hb_000907_100 Hb_004884_060--Hb_000907_100 Hb_002989_080 Hb_002989_080 Hb_004884_060--Hb_002989_080 Hb_007178_010 Hb_007178_010 Hb_004884_060--Hb_007178_010 Hb_002843_160 Hb_002843_160 Hb_004884_060--Hb_002843_160 Hb_005488_070 Hb_005488_070 Hb_003656_030--Hb_005488_070 Hb_003656_030--Hb_007178_010 Hb_000208_240 Hb_000208_240 Hb_003656_030--Hb_000208_240 Hb_019654_070 Hb_019654_070 Hb_003656_030--Hb_019654_070 Hb_003627_020 Hb_003627_020 Hb_003656_030--Hb_003627_020 Hb_004126_010 Hb_004126_010 Hb_003656_030--Hb_004126_010 Hb_040996_010--Hb_012055_020 Hb_000057_060 Hb_000057_060 Hb_040996_010--Hb_000057_060 Hb_040996_010--Hb_019613_020 Hb_000599_120 Hb_000599_120 Hb_040996_010--Hb_000599_120 Hb_040996_010--Hb_000005_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
36.4077 1.08569 0.391872 4.0588 52.7332 49.7986
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
20.0931 8.19927 43.12 11.6337 2.05899

CAGE analysis