Hb_138652_020

Information

Type -
Description -
Location Contig138652: 3899-4576
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_138652_020 0.0 - - -
2 Hb_057746_010 0.2255306896 - - -
3 Hb_037605_010 0.2380101724 - - PREDICTED: uncharacterized protein LOC105641027 [Jatropha curcas]
4 Hb_012194_010 0.2447955386 - - PREDICTED: putative ribonuclease H protein At1g65750-like [Citrus sinensis]
5 Hb_006275_030 0.2448033482 - - -
6 Hb_000574_020 0.2449528648 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
7 Hb_002463_080 0.2454919459 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
8 Hb_005741_010 0.2456304673 - - PREDICTED: uncharacterized protein LOC105775353 [Gossypium raimondii]
9 Hb_003556_020 0.2457848785 - - PREDICTED: non-specific lipid-transfer protein D, cotyledon-specific isoform-like [Citrus sinensis]
10 Hb_004458_050 0.2461014175 - - -
11 Hb_011360_100 0.247981283 - - -
12 Hb_059069_010 0.251167641 - - PREDICTED: uncharacterized protein LOC105180180, partial [Sesamum indicum]
13 Hb_038675_010 0.2514171803 - - PREDICTED: uncharacterized protein LOC105155307, partial [Sesamum indicum]
14 Hb_010222_010 0.2545401865 - - -
15 Hb_000188_090 0.2554391785 - - JHL22C18.10 [Jatropha curcas]
16 Hb_000934_220 0.2570967559 - - PREDICTED: uncharacterized protein LOC104890722 [Beta vulgaris subsp. vulgaris]
17 Hb_001023_020 0.2576035532 - - hypothetical protein POPTR_1605s00200g [Populus trichocarpa]
18 Hb_101040_010 0.2583634743 - - -
19 Hb_001676_030 0.2594339813 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
20 Hb_000831_040 0.2614990134 - - -

Gene co-expression network

sample Hb_138652_020 Hb_138652_020 Hb_057746_010 Hb_057746_010 Hb_138652_020--Hb_057746_010 Hb_037605_010 Hb_037605_010 Hb_138652_020--Hb_037605_010 Hb_012194_010 Hb_012194_010 Hb_138652_020--Hb_012194_010 Hb_006275_030 Hb_006275_030 Hb_138652_020--Hb_006275_030 Hb_000574_020 Hb_000574_020 Hb_138652_020--Hb_000574_020 Hb_002463_080 Hb_002463_080 Hb_138652_020--Hb_002463_080 Hb_004317_050 Hb_004317_050 Hb_057746_010--Hb_004317_050 Hb_165078_010 Hb_165078_010 Hb_057746_010--Hb_165078_010 Hb_002490_040 Hb_002490_040 Hb_057746_010--Hb_002490_040 Hb_000563_290 Hb_000563_290 Hb_057746_010--Hb_000563_290 Hb_000195_050 Hb_000195_050 Hb_057746_010--Hb_000195_050 Hb_038675_010 Hb_038675_010 Hb_057746_010--Hb_038675_010 Hb_037605_010--Hb_000195_050 Hb_037605_010--Hb_000563_290 Hb_037605_010--Hb_038675_010 Hb_059069_010 Hb_059069_010 Hb_037605_010--Hb_059069_010 Hb_011360_100 Hb_011360_100 Hb_037605_010--Hb_011360_100 Hb_037605_010--Hb_002490_040 Hb_005741_010 Hb_005741_010 Hb_012194_010--Hb_005741_010 Hb_004458_050 Hb_004458_050 Hb_012194_010--Hb_004458_050 Hb_012194_010--Hb_006275_030 Hb_012194_010--Hb_000574_020 Hb_012194_010--Hb_011360_100 Hb_012194_010--Hb_002463_080 Hb_006275_030--Hb_000574_020 Hb_006275_030--Hb_002463_080 Hb_003556_020 Hb_003556_020 Hb_006275_030--Hb_003556_020 Hb_006275_030--Hb_005741_010 Hb_006275_030--Hb_004458_050 Hb_000574_020--Hb_002463_080 Hb_000574_020--Hb_003556_020 Hb_000574_020--Hb_005741_010 Hb_000574_020--Hb_004458_050 Hb_002463_080--Hb_003556_020 Hb_002463_080--Hb_005741_010 Hb_002463_080--Hb_004458_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.49874 0.092497 0 0 0.0544892 2.35302
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.164493 0.187041

CAGE analysis