Hb_037605_010

Information

Type -
Description -
Location Contig37605: 4-531
Sequence    

Annotation

kegg
ID mtr:MTR_6g026690
description hypothetical protein
nr
ID XP_012080862.1
description PREDICTED: uncharacterized protein LOC105641027 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID E6NUA7
description JHL22C18.10 protein OS=Jatropha curcas GN=JHL22C18.10 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_037605_010 0.0 - - PREDICTED: uncharacterized protein LOC105641027 [Jatropha curcas]
2 Hb_000195_050 0.2227780767 - - -
3 Hb_000563_290 0.2252386546 - - non-ltr retroelement reverse transcriptase [Rosa rugosa]
4 Hb_038675_010 0.2260196032 - - PREDICTED: uncharacterized protein LOC105155307, partial [Sesamum indicum]
5 Hb_059069_010 0.2262062244 - - PREDICTED: uncharacterized protein LOC105180180, partial [Sesamum indicum]
6 Hb_011360_100 0.2295837516 - - -
7 Hb_002490_040 0.2308107757 - - 20S proteasome beta subunit C2 [Hevea brasiliensis]
8 Hb_004458_050 0.2332433646 - - -
9 Hb_057746_010 0.2336669967 - - -
10 Hb_005741_010 0.2346500134 - - PREDICTED: uncharacterized protein LOC105775353 [Gossypium raimondii]
11 Hb_138652_020 0.2380101724 - - -
12 Hb_012194_010 0.2387729253 - - PREDICTED: putative ribonuclease H protein At1g65750-like [Citrus sinensis]
13 Hb_004429_040 0.243227153 - - -
14 Hb_001676_040 0.2436236457 - - PREDICTED: uncharacterized protein LOC105637261 isoform X2 [Jatropha curcas]
15 Hb_006275_030 0.2473294945 - - -
16 Hb_002333_030 0.2474126898 - - -
17 Hb_000574_020 0.2486335042 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
18 Hb_002463_080 0.2520610581 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
19 Hb_003556_020 0.2535441225 - - PREDICTED: non-specific lipid-transfer protein D, cotyledon-specific isoform-like [Citrus sinensis]
20 Hb_001241_060 0.2647158584 - - -

Gene co-expression network

sample Hb_037605_010 Hb_037605_010 Hb_000195_050 Hb_000195_050 Hb_037605_010--Hb_000195_050 Hb_000563_290 Hb_000563_290 Hb_037605_010--Hb_000563_290 Hb_038675_010 Hb_038675_010 Hb_037605_010--Hb_038675_010 Hb_059069_010 Hb_059069_010 Hb_037605_010--Hb_059069_010 Hb_011360_100 Hb_011360_100 Hb_037605_010--Hb_011360_100 Hb_002490_040 Hb_002490_040 Hb_037605_010--Hb_002490_040 Hb_000195_050--Hb_000563_290 Hb_000195_050--Hb_038675_010 Hb_000195_050--Hb_059069_010 Hb_000195_050--Hb_011360_100 Hb_004458_050 Hb_004458_050 Hb_000195_050--Hb_004458_050 Hb_005741_010 Hb_005741_010 Hb_000195_050--Hb_005741_010 Hb_004429_040 Hb_004429_040 Hb_000563_290--Hb_004429_040 Hb_000563_290--Hb_038675_010 Hb_000563_290--Hb_059069_010 Hb_000563_290--Hb_002490_040 Hb_000563_290--Hb_011360_100 Hb_038675_010--Hb_059069_010 Hb_038675_010--Hb_011360_100 Hb_038675_010--Hb_004458_050 Hb_038675_010--Hb_005741_010 Hb_012194_010 Hb_012194_010 Hb_038675_010--Hb_012194_010 Hb_059069_010--Hb_011360_100 Hb_059069_010--Hb_004458_050 Hb_059069_010--Hb_005741_010 Hb_059069_010--Hb_012194_010 Hb_011360_100--Hb_004458_050 Hb_011360_100--Hb_005741_010 Hb_011360_100--Hb_012194_010 Hb_006275_030 Hb_006275_030 Hb_011360_100--Hb_006275_030 Hb_002490_040--Hb_004429_040 Hb_001241_060 Hb_001241_060 Hb_002490_040--Hb_001241_060 Hb_002490_040--Hb_000195_050 Hb_002490_040--Hb_038675_010 Hb_002490_040--Hb_059069_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.105277 0 0 0 0 0.27189
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0399531 0

CAGE analysis