Hb_097433_020

Information

Type -
Description -
Location Contig97433: 4585-6006
Sequence    

Annotation

kegg
ID rcu:RCOM_0569190
description ATP-binding cassette transporter, putative (EC:3.6.3.30)
nr
ID XP_002530787.1
description ATP-binding cassette transporter, putative [Ricinus communis]
swissprot
ID Q9M2V7
description ABC transporter G family member 16 OS=Arabidopsis thaliana GN=ABCG16 PE=2 SV=2
trembl
ID B9SXR8
description ATP-binding cassette transporter, putative OS=Ricinus communis GN=RCOM_0569190 PE=3 SV=1
Gene Ontology
ID GO:0016020
description abc transporter g family member 17-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_097433_020 0.0 - - ATP-binding cassette transporter, putative [Ricinus communis]
2 Hb_057217_010 0.2404081086 - - PREDICTED: uncharacterized protein LOC104594412 [Nelumbo nucifera]
3 Hb_005715_020 0.2487889062 - - PREDICTED: ras-related protein RABC2a-like isoform X2 [Jatropha curcas]
4 Hb_000334_200 0.249000484 desease resistance Gene Name: RVT_1 PREDICTED: putative disease resistance protein RGA3 [Jatropha curcas]
5 Hb_002737_020 0.2589227469 - - metallothionein [Bruguiera gymnorhiza]
6 Hb_018118_020 0.2606225603 - - unnamed protein product [Vitis vinifera]
7 Hb_050495_010 0.2622269229 - - heat-shock protein, putative [Ricinus communis]
8 Hb_003772_020 0.2691125097 - - PREDICTED: uncharacterized protein LOC105037131, partial [Elaeis guineensis]
9 Hb_054649_020 0.2696323414 - - PREDICTED: uncharacterized protein LOC102629934 [Citrus sinensis]
10 Hb_001250_120 0.2742711769 - - PREDICTED: homeobox protein knotted-1-like 6 [Jatropha curcas]
11 Hb_004361_030 0.2788193148 - - PREDICTED: uncharacterized protein LOC104239397 isoform X1 [Nicotiana sylvestris]
12 Hb_000032_530 0.2831711385 - - -
13 Hb_004650_090 0.2844872826 - - -
14 Hb_010447_020 0.2866391948 - - PREDICTED: uncharacterized protein LOC105797464 [Gossypium raimondii]
15 Hb_167316_010 0.2880674035 - - PREDICTED: serine/threonine-protein phosphatase PP1 isozyme 1 [Nicotiana sylvestris]
16 Hb_116685_010 0.2901567499 - - hypothetical protein POPTR_0013s02830g [Populus trichocarpa]
17 Hb_007978_020 0.2913668704 transcription factor TF Family: bZIP PREDICTED: transcription factor TGA1-like [Jatropha curcas]
18 Hb_088176_010 0.2981884286 - - -
19 Hb_033926_010 0.2993061067 - - -
20 Hb_027337_070 0.3002753121 - - hypothetical protein POPTR_0001s29030g [Populus trichocarpa]

Gene co-expression network

sample Hb_097433_020 Hb_097433_020 Hb_057217_010 Hb_057217_010 Hb_097433_020--Hb_057217_010 Hb_005715_020 Hb_005715_020 Hb_097433_020--Hb_005715_020 Hb_000334_200 Hb_000334_200 Hb_097433_020--Hb_000334_200 Hb_002737_020 Hb_002737_020 Hb_097433_020--Hb_002737_020 Hb_018118_020 Hb_018118_020 Hb_097433_020--Hb_018118_020 Hb_050495_010 Hb_050495_010 Hb_097433_020--Hb_050495_010 Hb_172632_020 Hb_172632_020 Hb_057217_010--Hb_172632_020 Hb_004361_030 Hb_004361_030 Hb_057217_010--Hb_004361_030 Hb_001218_080 Hb_001218_080 Hb_057217_010--Hb_001218_080 Hb_002367_120 Hb_002367_120 Hb_057217_010--Hb_002367_120 Hb_000270_850 Hb_000270_850 Hb_057217_010--Hb_000270_850 Hb_126907_010 Hb_126907_010 Hb_057217_010--Hb_126907_010 Hb_007021_030 Hb_007021_030 Hb_005715_020--Hb_007021_030 Hb_005715_020--Hb_018118_020 Hb_010997_100 Hb_010997_100 Hb_005715_020--Hb_010997_100 Hb_004650_090 Hb_004650_090 Hb_005715_020--Hb_004650_090 Hb_001396_150 Hb_001396_150 Hb_005715_020--Hb_001396_150 Hb_000243_020 Hb_000243_020 Hb_000334_200--Hb_000243_020 Hb_181975_010 Hb_181975_010 Hb_000334_200--Hb_181975_010 Hb_002326_070 Hb_002326_070 Hb_000334_200--Hb_002326_070 Hb_002205_100 Hb_002205_100 Hb_000334_200--Hb_002205_100 Hb_001396_170 Hb_001396_170 Hb_000334_200--Hb_001396_170 Hb_002737_020--Hb_018118_020 Hb_000123_020 Hb_000123_020 Hb_002737_020--Hb_000123_020 Hb_000123_030 Hb_000123_030 Hb_002737_020--Hb_000123_030 Hb_076233_020 Hb_076233_020 Hb_002737_020--Hb_076233_020 Hb_003772_020 Hb_003772_020 Hb_002737_020--Hb_003772_020 Hb_159307_010 Hb_159307_010 Hb_018118_020--Hb_159307_010 Hb_002370_040 Hb_002370_040 Hb_018118_020--Hb_002370_040 Hb_116638_010 Hb_116638_010 Hb_018118_020--Hb_116638_010 Hb_084470_010 Hb_084470_010 Hb_018118_020--Hb_084470_010 Hb_167316_010 Hb_167316_010 Hb_050495_010--Hb_167316_010 Hb_189237_010 Hb_189237_010 Hb_050495_010--Hb_189237_010 Hb_144951_010 Hb_144951_010 Hb_050495_010--Hb_144951_010 Hb_116685_010 Hb_116685_010 Hb_050495_010--Hb_116685_010 Hb_001565_120 Hb_001565_120 Hb_050495_010--Hb_001565_120 Hb_004108_010 Hb_004108_010 Hb_050495_010--Hb_004108_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.177036 0.843611 0.0998483 0.0142789 0.0349409 0.577138
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0537473 0

CAGE analysis