Hb_002205_100

Information

Type -
Description -
Location Contig2205: 87733-91304
Sequence    

Annotation

kegg
ID rcu:RCOM_0689670
description ATP binding protein, putative (EC:2.7.10.2)
nr
ID XP_002520858.1
description ATP binding protein, putative [Ricinus communis]
swissprot
ID Q9SW11
description U-box domain-containing protein 35 OS=Arabidopsis thaliana GN=PUB35 PE=1 SV=2
trembl
ID B9S4D9
description ATP binding protein, putative OS=Ricinus communis GN=RCOM_0689670 PE=4 SV=1
Gene Ontology
ID GO:0004715
description atp binding

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_22716: 88219-88929
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002205_100 0.0 - - ATP binding protein, putative [Ricinus communis]
2 Hb_000334_200 0.2538556877 desease resistance Gene Name: RVT_1 PREDICTED: putative disease resistance protein RGA3 [Jatropha curcas]
3 Hb_116685_010 0.2543772515 - - hypothetical protein POPTR_0013s02830g [Populus trichocarpa]
4 Hb_090459_010 0.2591405155 - - hypothetical protein POPTR_0005s042901g, partial [Populus trichocarpa]
5 Hb_001584_220 0.2596450731 - - galactinol synthase [Manihot esculenta]
6 Hb_181975_010 0.2758198854 - - PREDICTED: probable disease resistance protein At4g27220 [Populus euphratica]
7 Hb_001907_100 0.2777461593 - - PREDICTED: putative disease resistance protein At3g14460 [Vitis vinifera]
8 Hb_006420_020 0.27793398 - - PREDICTED: UPF0392 protein RCOM_0530710 [Jatropha curcas]
9 Hb_079733_010 0.2781454105 - - -
10 Hb_002326_070 0.2800036179 - - ent-kaurene oxidase, chloroplastic [Jatropha curcas]
11 Hb_000932_080 0.2802165847 - - -
12 Hb_001114_230 0.2813641451 - - -
13 Hb_123885_010 0.2814197468 - - Disease resistance protein RPS5, putative [Ricinus communis]
14 Hb_000768_010 0.2832892804 - - PREDICTED: protein TRANSPARENT TESTA 12-like isoform X3 [Citrus sinensis]
15 Hb_082945_020 0.2843099288 - - PREDICTED: pentatricopeptide repeat-containing protein At5g66520-like [Jatropha curcas]
16 Hb_103790_010 0.2843514086 - - PREDICTED: pre-mRNA-processing protein 40A isoform X4 [Jatropha curcas]
17 Hb_003849_260 0.2864779495 - - PREDICTED: uncharacterized protein LOC105644666 [Jatropha curcas]
18 Hb_022534_010 0.287904 - - hypothetical protein CICLE_v10000066mg [Citrus clementina]
19 Hb_012226_010 0.2897340591 - - PREDICTED: protein DGCR14 [Jatropha curcas]
20 Hb_002316_050 0.2934436615 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_002205_100 Hb_002205_100 Hb_000334_200 Hb_000334_200 Hb_002205_100--Hb_000334_200 Hb_116685_010 Hb_116685_010 Hb_002205_100--Hb_116685_010 Hb_090459_010 Hb_090459_010 Hb_002205_100--Hb_090459_010 Hb_001584_220 Hb_001584_220 Hb_002205_100--Hb_001584_220 Hb_181975_010 Hb_181975_010 Hb_002205_100--Hb_181975_010 Hb_001907_100 Hb_001907_100 Hb_002205_100--Hb_001907_100 Hb_000243_020 Hb_000243_020 Hb_000334_200--Hb_000243_020 Hb_000334_200--Hb_181975_010 Hb_002326_070 Hb_002326_070 Hb_000334_200--Hb_002326_070 Hb_097433_020 Hb_097433_020 Hb_000334_200--Hb_097433_020 Hb_001396_170 Hb_001396_170 Hb_000334_200--Hb_001396_170 Hb_116685_010--Hb_090459_010 Hb_125981_010 Hb_125981_010 Hb_116685_010--Hb_125981_010 Hb_127819_010 Hb_127819_010 Hb_116685_010--Hb_127819_010 Hb_001565_120 Hb_001565_120 Hb_116685_010--Hb_001565_120 Hb_000960_010 Hb_000960_010 Hb_116685_010--Hb_000960_010 Hb_155642_010 Hb_155642_010 Hb_116685_010--Hb_155642_010 Hb_090459_010--Hb_000960_010 Hb_090459_010--Hb_001565_120 Hb_090459_010--Hb_127819_010 Hb_136886_010 Hb_136886_010 Hb_090459_010--Hb_136886_010 Hb_090459_010--Hb_155642_010 Hb_003849_260 Hb_003849_260 Hb_001584_220--Hb_003849_260 Hb_003633_140 Hb_003633_140 Hb_001584_220--Hb_003633_140 Hb_001999_250 Hb_001999_250 Hb_001584_220--Hb_001999_250 Hb_028795_010 Hb_028795_010 Hb_001584_220--Hb_028795_010 Hb_012226_010 Hb_012226_010 Hb_001584_220--Hb_012226_010 Hb_001141_360 Hb_001141_360 Hb_001584_220--Hb_001141_360 Hb_007257_050 Hb_007257_050 Hb_181975_010--Hb_007257_050 Hb_181975_010--Hb_001907_100 Hb_000003_390 Hb_000003_390 Hb_181975_010--Hb_000003_390 Hb_031089_030 Hb_031089_030 Hb_181975_010--Hb_031089_030 Hb_007978_020 Hb_007978_020 Hb_181975_010--Hb_007978_020 Hb_001493_010 Hb_001493_010 Hb_181975_010--Hb_001493_010 Hb_002316_050 Hb_002316_050 Hb_001907_100--Hb_002316_050 Hb_003155_020 Hb_003155_020 Hb_001907_100--Hb_003155_020 Hb_010831_020 Hb_010831_020 Hb_001907_100--Hb_010831_020 Hb_000808_070 Hb_000808_070 Hb_001907_100--Hb_000808_070 Hb_001907_100--Hb_007257_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.380017 2.89081 0.108945 0.503 0.390447 1.27516
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.593602 0.346549 0 0 0.0639428

CAGE analysis