Hb_010997_100

Information

Type transcription factor
Description TF Family: mTERF
Location Contig10997: 64689-64898
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_02933: 63750-63969
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_010997_100 0.0 transcription factor TF Family: mTERF -
2 Hb_005715_020 0.235790014 - - PREDICTED: ras-related protein RABC2a-like isoform X2 [Jatropha curcas]
3 Hb_000032_530 0.2441813041 - - -
4 Hb_120384_010 0.2496221532 - - -
5 Hb_000062_500 0.252739241 - - PREDICTED: urease-like [Zea mays]
6 Hb_003647_010 0.2615694155 - - hypothetical protein JCGZ_25097 [Jatropha curcas]
7 Hb_032018_010 0.2617392723 - - PREDICTED: uncharacterized protein LOC105778873 [Gossypium raimondii]
8 Hb_004650_090 0.270981685 - - -
9 Hb_005203_050 0.2769857622 - - anthocyanidin 3-O-glucosyltransferase [Hevea brasiliensis]
10 Hb_018118_020 0.2852113664 - - unnamed protein product [Vitis vinifera]
11 Hb_041237_010 0.2857916172 - - conserved hypothetical protein [Ricinus communis]
12 Hb_000014_130 0.2866187325 - - PREDICTED: uncharacterized protein LOC104219776 [Nicotiana sylvestris]
13 Hb_003772_020 0.290650583 - - PREDICTED: uncharacterized protein LOC105037131, partial [Elaeis guineensis]
14 Hb_009372_010 0.2908418107 - - -
15 Hb_159307_010 0.2910060929 - - PREDICTED: probable isoleucine--tRNA ligase, cytoplasmic [Jatropha curcas]
16 Hb_001158_180 0.2963370336 - - -
17 Hb_000413_170 0.2987274634 - - PREDICTED: probable histone H2A.3 [Jatropha curcas]
18 Hb_007978_020 0.3043791581 transcription factor TF Family: bZIP PREDICTED: transcription factor TGA1-like [Jatropha curcas]
19 Hb_116638_010 0.3060858187 - - conserved hypothetical protein [Ricinus communis]
20 Hb_097433_020 0.3087091488 - - ATP-binding cassette transporter, putative [Ricinus communis]

Gene co-expression network

sample Hb_010997_100 Hb_010997_100 Hb_005715_020 Hb_005715_020 Hb_010997_100--Hb_005715_020 Hb_000032_530 Hb_000032_530 Hb_010997_100--Hb_000032_530 Hb_120384_010 Hb_120384_010 Hb_010997_100--Hb_120384_010 Hb_000062_500 Hb_000062_500 Hb_010997_100--Hb_000062_500 Hb_003647_010 Hb_003647_010 Hb_010997_100--Hb_003647_010 Hb_032018_010 Hb_032018_010 Hb_010997_100--Hb_032018_010 Hb_007021_030 Hb_007021_030 Hb_005715_020--Hb_007021_030 Hb_018118_020 Hb_018118_020 Hb_005715_020--Hb_018118_020 Hb_004650_090 Hb_004650_090 Hb_005715_020--Hb_004650_090 Hb_097433_020 Hb_097433_020 Hb_005715_020--Hb_097433_020 Hb_001396_150 Hb_001396_150 Hb_005715_020--Hb_001396_150 Hb_000032_530--Hb_097433_020 Hb_000032_530--Hb_004650_090 Hb_001300_050 Hb_001300_050 Hb_000032_530--Hb_001300_050 Hb_000032_530--Hb_005715_020 Hb_089341_010 Hb_089341_010 Hb_000032_530--Hb_089341_010 Hb_120384_010--Hb_003647_010 Hb_001584_220 Hb_001584_220 Hb_120384_010--Hb_001584_220 Hb_001141_460 Hb_001141_460 Hb_120384_010--Hb_001141_460 Hb_000365_060 Hb_000365_060 Hb_120384_010--Hb_000365_060 Hb_005843_040 Hb_005843_040 Hb_120384_010--Hb_005843_040 Hb_000062_500--Hb_032018_010 Hb_005203_050 Hb_005203_050 Hb_000062_500--Hb_005203_050 Hb_003772_020 Hb_003772_020 Hb_000062_500--Hb_003772_020 Hb_007978_020 Hb_007978_020 Hb_000062_500--Hb_007978_020 Hb_000014_130 Hb_000014_130 Hb_000062_500--Hb_000014_130 Hb_167316_010 Hb_167316_010 Hb_000062_500--Hb_167316_010 Hb_028795_010 Hb_028795_010 Hb_003647_010--Hb_028795_010 Hb_001301_230 Hb_001301_230 Hb_003647_010--Hb_001301_230 Hb_000808_070 Hb_000808_070 Hb_003647_010--Hb_000808_070 Hb_003633_140 Hb_003633_140 Hb_003647_010--Hb_003633_140 Hb_002073_040 Hb_002073_040 Hb_003647_010--Hb_002073_040 Hb_002837_090 Hb_002837_090 Hb_032018_010--Hb_002837_090 Hb_032018_010--Hb_005203_050 Hb_032018_010--Hb_000014_130 Hb_032018_010--Hb_003772_020 Hb_000317_090 Hb_000317_090 Hb_032018_010--Hb_000317_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.49305 11.6665 0.912447 0 3.90976 16.8387
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.951337 1.06428 0.444499 1.10792

CAGE analysis