Hb_048643_010

Information

Type -
Description -
Location Contig48643: 51-1162
Sequence    

Annotation

kegg
ID rcu:RCOM_0174470
description hypothetical protein
nr
ID AAO37645.1
description NBS-LRR resistance protein RGH1 [Manihot esculenta]
swissprot
ID Q7XA40
description Putative disease resistance protein RGA3 OS=Solanum bulbocastanum GN=RGA3 PE=2 SV=2
trembl
ID Q84XG0
description NBS-LRR resistance protein RGH1 OS=Manihot esculenta PE=4 SV=1
Gene Ontology
ID GO:0005515
description disease resistance protein rga3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_44985: 305-428
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_048643_010 0.0 - - NBS-LRR resistance protein RGH1 [Manihot esculenta]
2 Hb_000152_460 0.1296738381 - - PREDICTED: protein EXORDIUM-like 3 [Jatropha curcas]
3 Hb_004531_110 0.1452697048 - - PREDICTED: aquaporin TIP2-1 [Jatropha curcas]
4 Hb_000818_080 0.1569512081 - - PREDICTED: monosaccharide-sensing protein 2 [Jatropha curcas]
5 Hb_000000_110 0.1574585567 - - hypothetical protein CISIN_1g0027772mg, partial [Citrus sinensis]
6 Hb_002928_120 0.1584040838 - - 1,4-alpha-glucan branching enzyme [Manihot esculenta]
7 Hb_000025_400 0.1614308619 - - PREDICTED: uncharacterized protein LOC105110770 [Populus euphratica]
8 Hb_001832_210 0.1660503061 - - PREDICTED: venom phosphodiesterase 2 [Jatropha curcas]
9 Hb_000000_120 0.1683820009 - - hypothetical protein EUGRSUZ_A004731, partial [Eucalyptus grandis]
10 Hb_010253_020 0.1744447318 - - alcohol dehydrogenase, putative [Ricinus communis]
11 Hb_003082_040 0.1773530028 - - PREDICTED: receptor-like protein kinase HSL1 [Phoenix dactylifera]
12 Hb_106136_010 0.1775580447 - - Disease resistance protein RPS5, putative [Ricinus communis]
13 Hb_003506_020 0.1799225953 - - PREDICTED: uncharacterized protein LOC105125881 isoform X1 [Populus euphratica]
14 Hb_004409_030 0.1808047404 - - Glutamine synthetase 1,4 [Theobroma cacao]
15 Hb_002119_070 0.186341066 transcription factor TF Family: C2H2 zinc finger protein, putative [Ricinus communis]
16 Hb_001814_080 0.1868068806 - - PREDICTED: oleosin 1-like [Jatropha curcas]
17 Hb_005016_020 0.1869534171 desease resistance Gene Name: ABC_membrane ABC transporter family protein [Hevea brasiliensis]
18 Hb_160405_010 0.1875961806 - - NBS-LRR resistance protein RGH1 [Manihot esculenta]
19 Hb_001900_060 0.1899681733 - - PREDICTED: neutral alpha-glucosidase C [Jatropha curcas]
20 Hb_001446_060 0.191769038 - - BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]

Gene co-expression network

sample Hb_048643_010 Hb_048643_010 Hb_000152_460 Hb_000152_460 Hb_048643_010--Hb_000152_460 Hb_004531_110 Hb_004531_110 Hb_048643_010--Hb_004531_110 Hb_000818_080 Hb_000818_080 Hb_048643_010--Hb_000818_080 Hb_000000_110 Hb_000000_110 Hb_048643_010--Hb_000000_110 Hb_002928_120 Hb_002928_120 Hb_048643_010--Hb_002928_120 Hb_000025_400 Hb_000025_400 Hb_048643_010--Hb_000025_400 Hb_000152_460--Hb_000025_400 Hb_000152_460--Hb_002928_120 Hb_001900_060 Hb_001900_060 Hb_000152_460--Hb_001900_060 Hb_000083_130 Hb_000083_130 Hb_000152_460--Hb_000083_130 Hb_000152_460--Hb_000000_110 Hb_001071_060 Hb_001071_060 Hb_004531_110--Hb_001071_060 Hb_001832_210 Hb_001832_210 Hb_004531_110--Hb_001832_210 Hb_002119_070 Hb_002119_070 Hb_004531_110--Hb_002119_070 Hb_001148_040 Hb_001148_040 Hb_004531_110--Hb_001148_040 Hb_004531_110--Hb_002928_120 Hb_001486_060 Hb_001486_060 Hb_000818_080--Hb_001486_060 Hb_000793_040 Hb_000793_040 Hb_000818_080--Hb_000793_040 Hb_002026_080 Hb_002026_080 Hb_000818_080--Hb_002026_080 Hb_003371_190 Hb_003371_190 Hb_000818_080--Hb_003371_190 Hb_000818_080--Hb_002928_120 Hb_004657_080 Hb_004657_080 Hb_000818_080--Hb_004657_080 Hb_005016_020 Hb_005016_020 Hb_000000_110--Hb_005016_020 Hb_000000_110--Hb_001832_210 Hb_000220_080 Hb_000220_080 Hb_000000_110--Hb_000220_080 Hb_001178_080 Hb_001178_080 Hb_000000_110--Hb_001178_080 Hb_000000_120 Hb_000000_120 Hb_000000_110--Hb_000000_120 Hb_002685_030 Hb_002685_030 Hb_000000_110--Hb_002685_030 Hb_002928_120--Hb_000793_040 Hb_002928_180 Hb_002928_180 Hb_002928_120--Hb_002928_180 Hb_001021_030 Hb_001021_030 Hb_002928_120--Hb_001021_030 Hb_025432_010 Hb_025432_010 Hb_002928_120--Hb_025432_010 Hb_000429_110 Hb_000429_110 Hb_002928_120--Hb_000429_110 Hb_000236_110 Hb_000236_110 Hb_002928_120--Hb_000236_110 Hb_000465_260 Hb_000465_260 Hb_000025_400--Hb_000465_260 Hb_008468_030 Hb_008468_030 Hb_000025_400--Hb_008468_030 Hb_000056_280 Hb_000056_280 Hb_000025_400--Hb_000056_280 Hb_000025_400--Hb_002928_120 Hb_000025_400--Hb_005016_020 Hb_004631_110 Hb_004631_110 Hb_000025_400--Hb_004631_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.445982 2.87083 0.304964 4.26284 0.910887 0.486489
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.17946 0.0705784 0.130702 2.70451 1.01743

CAGE analysis