Hb_164010_090

Information

Type -
Description -
Location Contig164010: 56360-59482
Sequence    

Annotation

kegg
ID rcu:RCOM_0522740
description cellulose synthase, putative (EC:2.4.1.12)
nr
ID XP_002522779.1
description cellulose synthase, putative [Ricinus communis]
swissprot
ID Q8VZK9
description Cellulose synthase-like protein E1 OS=Arabidopsis thaliana GN=CSLE1 PE=2 SV=1
trembl
ID B9S9W0
description Cellulose synthase, putative OS=Ricinus communis GN=RCOM_0522740 PE=4 SV=1
Gene Ontology
ID GO:0016020
description cellulose synthase-like protein e1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_15086: 56296-56388 , PASA_asmbl_15087: 56474-56784 , PASA_asmbl_15088: 57391-58171 , PASA_asmbl_15089: 58527-59171
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_164010_090 0.0 - - cellulose synthase, putative [Ricinus communis]
2 Hb_000141_220 0.0976780528 - - PREDICTED: 14 kDa proline-rich protein DC2.15-like [Gossypium raimondii]
3 Hb_004195_170 0.1291452776 - - ATP binding protein, putative [Ricinus communis]
4 Hb_005380_040 0.1359707663 - - hypothetical protein PRUPE_ppa015877mg, partial [Prunus persica]
5 Hb_017866_020 0.1420399037 transcription factor TF Family: WRKY WRKY transcription factor 40 [Jatropha curcas]
6 Hb_000589_180 0.1454901231 transcription factor TF Family: GRAS PREDICTED: scarecrow-like protein 9 [Jatropha curcas]
7 Hb_000844_010 0.1485279122 - - PREDICTED: lysine histidine transporter-like 8 [Jatropha curcas]
8 Hb_000045_180 0.1497031412 - - aquaporin PIP1 [Hevea brasiliensis]
9 Hb_003052_120 0.1499260212 - - hypothetical protein POPTR_0008s10970g [Populus trichocarpa]
10 Hb_000077_460 0.1529927774 - - -
11 Hb_003119_070 0.1530467448 - - Phytosulfokine receptor precursor, putative [Ricinus communis]
12 Hb_012807_060 0.1555324127 - - ABC transporter family protein [Hevea brasiliensis]
13 Hb_002783_320 0.1560151543 transcription factor TF Family: E2F-DP PREDICTED: transcription factor E2FC isoform X1 [Jatropha curcas]
14 Hb_003430_020 0.1577951534 - - PREDICTED: aldehyde dehydrogenase family 2 member B7, mitochondrial-like [Jatropha curcas]
15 Hb_002007_140 0.1610321525 transcription factor TF Family: C2H2 PREDICTED: zinc finger protein NUTCRACKER-like [Populus euphratica]
16 Hb_000000_060 0.1610524418 - - PREDICTED: wall-associated receptor kinase-like 14 [Jatropha curcas]
17 Hb_000762_070 0.1629645042 transcription factor TF Family: MYB PREDICTED: transcription factor WER-like [Jatropha curcas]
18 Hb_000086_370 0.1630325498 - - Long-chain-alcohol oxidase FAO2 [Triticum urartu]
19 Hb_004341_010 0.1641425896 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At1g61370 [Jatropha curcas]
20 Hb_013914_020 0.1646537596 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance RPP13-like protein 4 [Jatropha curcas]

Gene co-expression network

sample Hb_164010_090 Hb_164010_090 Hb_000141_220 Hb_000141_220 Hb_164010_090--Hb_000141_220 Hb_004195_170 Hb_004195_170 Hb_164010_090--Hb_004195_170 Hb_005380_040 Hb_005380_040 Hb_164010_090--Hb_005380_040 Hb_017866_020 Hb_017866_020 Hb_164010_090--Hb_017866_020 Hb_000589_180 Hb_000589_180 Hb_164010_090--Hb_000589_180 Hb_000844_010 Hb_000844_010 Hb_164010_090--Hb_000844_010 Hb_000141_220--Hb_017866_020 Hb_002003_020 Hb_002003_020 Hb_000141_220--Hb_002003_020 Hb_000077_460 Hb_000077_460 Hb_000141_220--Hb_000077_460 Hb_000141_220--Hb_000844_010 Hb_000045_180 Hb_000045_180 Hb_000141_220--Hb_000045_180 Hb_003453_030 Hb_003453_030 Hb_004195_170--Hb_003453_030 Hb_000086_370 Hb_000086_370 Hb_004195_170--Hb_000086_370 Hb_012807_060 Hb_012807_060 Hb_004195_170--Hb_012807_060 Hb_022501_020 Hb_022501_020 Hb_004195_170--Hb_022501_020 Hb_000657_030 Hb_000657_030 Hb_004195_170--Hb_000657_030 Hb_001408_050 Hb_001408_050 Hb_004195_170--Hb_001408_050 Hb_004724_070 Hb_004724_070 Hb_005380_040--Hb_004724_070 Hb_004341_010 Hb_004341_010 Hb_005380_040--Hb_004341_010 Hb_028207_030 Hb_028207_030 Hb_005380_040--Hb_028207_030 Hb_005380_040--Hb_000045_180 Hb_004837_170 Hb_004837_170 Hb_005380_040--Hb_004837_170 Hb_017866_020--Hb_000077_460 Hb_017866_020--Hb_002003_020 Hb_013914_020 Hb_013914_020 Hb_017866_020--Hb_013914_020 Hb_017866_020--Hb_000045_180 Hb_002007_140 Hb_002007_140 Hb_017866_020--Hb_002007_140 Hb_001283_010 Hb_001283_010 Hb_017866_020--Hb_001283_010 Hb_003430_020 Hb_003430_020 Hb_000589_180--Hb_003430_020 Hb_000589_180--Hb_002007_140 Hb_000589_180--Hb_000086_370 Hb_009581_050 Hb_009581_050 Hb_000589_180--Hb_009581_050 Hb_002475_100 Hb_002475_100 Hb_000589_180--Hb_002475_100 Hb_000000_060 Hb_000000_060 Hb_000589_180--Hb_000000_060 Hb_017417_030 Hb_017417_030 Hb_000844_010--Hb_017417_030 Hb_141142_010 Hb_141142_010 Hb_000844_010--Hb_141142_010 Hb_135811_060 Hb_135811_060 Hb_000844_010--Hb_135811_060 Hb_133636_010 Hb_133636_010 Hb_000844_010--Hb_133636_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0307454 8.37019 0.221192 3.14693 0.244917 0.41377
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0602228 0.0631824 0.0600682 7.96707 0.468721

CAGE analysis