Hb_000579_150

Information

Type -
Description -
Location Contig579: 166564-168533
Sequence    

Annotation

kegg
ID egr:104446353
description uncharacterized LOC104446353
nr
ID XP_010058516.1
description PREDICTED: uncharacterized protein LOC104446353 [Eucalyptus grandis]
swissprot
ID -
description -
trembl
ID A0A067KVV9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_08389 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000579_150 0.0 - - PREDICTED: uncharacterized protein LOC104446353 [Eucalyptus grandis]
2 Hb_032076_010 0.1683960126 - - -
3 Hb_012188_010 0.1976907956 - - PREDICTED: uncharacterized protein LOC105631113 [Jatropha curcas]
4 Hb_001217_060 0.2099109171 - - hypothetical protein PRUPE_ppa022673mg [Prunus persica]
5 Hb_054649_020 0.2605717921 - - PREDICTED: uncharacterized protein LOC102629934 [Citrus sinensis]
6 Hb_000188_030 0.2657698245 - - carboxylic ester hydrolase, putative [Ricinus communis]
7 Hb_001250_120 0.2886736028 - - PREDICTED: homeobox protein knotted-1-like 6 [Jatropha curcas]
8 Hb_167316_010 0.2910795063 - - PREDICTED: serine/threonine-protein phosphatase PP1 isozyme 1 [Nicotiana sylvestris]
9 Hb_007586_010 0.2940569695 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105126050 [Populus euphratica]
10 Hb_123056_010 0.2958730044 - - -
11 Hb_000894_050 0.2997853435 - - -
12 Hb_096257_010 0.2999257376 - - -
13 Hb_001396_170 0.3009865798 - - unnamed protein product [Vitis vinifera]
14 Hb_001703_100 0.3012430865 - - PREDICTED: uncharacterized protein LOC104885230 [Beta vulgaris subsp. vulgaris]
15 Hb_180003_010 0.3017901826 - - PREDICTED: uncharacterized protein LOC105647154 [Jatropha curcas]
16 Hb_030449_010 0.3020243457 - - -
17 Hb_002269_010 0.3027049274 - - PREDICTED: WAT1-related protein At4g15540-like [Jatropha curcas]
18 Hb_021470_010 0.3034670886 - - polyprotein [Citrus endogenous pararetrovirus]
19 Hb_004409_010 0.3044516479 - - -
20 Hb_141990_060 0.3050457844 - - -

Gene co-expression network

sample Hb_000579_150 Hb_000579_150 Hb_032076_010 Hb_032076_010 Hb_000579_150--Hb_032076_010 Hb_012188_010 Hb_012188_010 Hb_000579_150--Hb_012188_010 Hb_001217_060 Hb_001217_060 Hb_000579_150--Hb_001217_060 Hb_054649_020 Hb_054649_020 Hb_000579_150--Hb_054649_020 Hb_000188_030 Hb_000188_030 Hb_000579_150--Hb_000188_030 Hb_001250_120 Hb_001250_120 Hb_000579_150--Hb_001250_120 Hb_032076_010--Hb_012188_010 Hb_032076_010--Hb_001217_060 Hb_000071_200 Hb_000071_200 Hb_032076_010--Hb_000071_200 Hb_005504_010 Hb_005504_010 Hb_032076_010--Hb_005504_010 Hb_101040_010 Hb_101040_010 Hb_032076_010--Hb_101040_010 Hb_012188_010--Hb_001217_060 Hb_012188_010--Hb_000071_200 Hb_012188_010--Hb_005504_010 Hb_012188_010--Hb_101040_010 Hb_001217_060--Hb_000071_200 Hb_001217_060--Hb_005504_010 Hb_005539_300 Hb_005539_300 Hb_001217_060--Hb_005539_300 Hb_000813_080 Hb_000813_080 Hb_054649_020--Hb_000813_080 Hb_054649_020--Hb_001250_120 Hb_017651_010 Hb_017651_010 Hb_054649_020--Hb_017651_010 Hb_167316_010 Hb_167316_010 Hb_054649_020--Hb_167316_010 Hb_097433_020 Hb_097433_020 Hb_054649_020--Hb_097433_020 Hb_088084_010 Hb_088084_010 Hb_000188_030--Hb_088084_010 Hb_001529_030 Hb_001529_030 Hb_000188_030--Hb_001529_030 Hb_002269_010 Hb_002269_010 Hb_000188_030--Hb_002269_010 Hb_001703_100 Hb_001703_100 Hb_000188_030--Hb_001703_100 Hb_005269_010 Hb_005269_010 Hb_000188_030--Hb_005269_010 Hb_001250_110 Hb_001250_110 Hb_001250_120--Hb_001250_110 Hb_000014_140 Hb_000014_140 Hb_001250_120--Hb_000014_140 Hb_001565_120 Hb_001565_120 Hb_001250_120--Hb_001565_120 Hb_001250_120--Hb_000813_080 Hb_001250_120--Hb_167316_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0477696 0.0574417 0 0 0 0.0204042
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis