Hb_000071_200

Information

Type -
Description -
Location Contig71: 252238-254023
Sequence    

Annotation

kegg
ID -
description -
nr
ID XP_012438868.1
description PREDICTED: uncharacterized protein LOC105764710 isoform X3 [Gossypium raimondii]
swissprot
ID -
description -
trembl
ID A0A0D2PYA6
description Gossypium raimondii chromosome 8, whole genome shotgun sequence OS=Gossypium raimondii GN=B456_008G198600 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000071_200 0.0 - - PREDICTED: uncharacterized protein LOC105764710 isoform X3 [Gossypium raimondii]
2 Hb_001217_060 0.1132400443 - - hypothetical protein PRUPE_ppa022673mg [Prunus persica]
3 Hb_012188_010 0.1143582929 - - PREDICTED: uncharacterized protein LOC105631113 [Jatropha curcas]
4 Hb_032076_010 0.1679458159 - - -
5 Hb_101040_010 0.2078630235 - - -
6 Hb_001676_030 0.210464488 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
7 Hb_005539_300 0.211349843 - - PREDICTED: deacetoxyvindoline 4-hydroxylase-like [Populus euphratica]
8 Hb_005504_010 0.2354305058 - - hypothetical protein POPTR_1605s00200g [Populus trichocarpa]
9 Hb_001673_030 0.2636229675 - - hypothetical protein JCGZ_08729 [Jatropha curcas]
10 Hb_187661_010 0.2752669204 - - PREDICTED: thylakoidal processing peptidase 1, chloroplastic-like [Jatropha curcas]
11 Hb_142068_020 0.2832246415 - - PREDICTED: thylakoidal processing peptidase 1, chloroplastic-like [Jatropha curcas]
12 Hb_000454_020 0.2835942413 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
13 Hb_000656_130 0.2857646727 - - hypothetical protein PRUPE_ppa026157mg, partial [Prunus persica]
14 Hb_005671_030 0.2888571132 - - -
15 Hb_008891_020 0.2897100964 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103343662 [Prunus mume]
16 Hb_056305_010 0.2897391636 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
17 Hb_002257_070 0.2898633752 - - hypothetical protein, partial [Pseudomonas fluorescens]
18 Hb_003017_010 0.2902208375 - - PREDICTED: uncharacterized protein LOC104878882 [Vitis vinifera]
19 Hb_003985_020 0.2912260917 - - -
20 Hb_012587_010 0.292725812 - - -

Gene co-expression network

sample Hb_000071_200 Hb_000071_200 Hb_001217_060 Hb_001217_060 Hb_000071_200--Hb_001217_060 Hb_012188_010 Hb_012188_010 Hb_000071_200--Hb_012188_010 Hb_032076_010 Hb_032076_010 Hb_000071_200--Hb_032076_010 Hb_101040_010 Hb_101040_010 Hb_000071_200--Hb_101040_010 Hb_001676_030 Hb_001676_030 Hb_000071_200--Hb_001676_030 Hb_005539_300 Hb_005539_300 Hb_000071_200--Hb_005539_300 Hb_001217_060--Hb_012188_010 Hb_001217_060--Hb_032076_010 Hb_000579_150 Hb_000579_150 Hb_001217_060--Hb_000579_150 Hb_005504_010 Hb_005504_010 Hb_001217_060--Hb_005504_010 Hb_001217_060--Hb_005539_300 Hb_012188_010--Hb_032076_010 Hb_012188_010--Hb_000579_150 Hb_012188_010--Hb_005504_010 Hb_012188_010--Hb_101040_010 Hb_032076_010--Hb_000579_150 Hb_032076_010--Hb_005504_010 Hb_032076_010--Hb_101040_010 Hb_101040_010--Hb_001676_030 Hb_101040_010--Hb_005504_010 Hb_000317_090 Hb_000317_090 Hb_101040_010--Hb_000317_090 Hb_138652_020 Hb_138652_020 Hb_101040_010--Hb_138652_020 Hb_002837_090 Hb_002837_090 Hb_101040_010--Hb_002837_090 Hb_005671_030 Hb_005671_030 Hb_001676_030--Hb_005671_030 Hb_187661_010 Hb_187661_010 Hb_001676_030--Hb_187661_010 Hb_008891_020 Hb_008891_020 Hb_001676_030--Hb_008891_020 Hb_056305_010 Hb_056305_010 Hb_001676_030--Hb_056305_010 Hb_005539_300--Hb_001676_030 Hb_142068_020 Hb_142068_020 Hb_005539_300--Hb_142068_020 Hb_000454_020 Hb_000454_020 Hb_005539_300--Hb_000454_020 Hb_000656_130 Hb_000656_130 Hb_005539_300--Hb_000656_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0488038 0.0115894 0 0 0 0.0245496
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis