Hb_000033_070

Information

Type -
Description -
Location Contig33: 132316-133287
Sequence    

Annotation

kegg
ID sly:544031
description ER5; ethylene-responsive late embryogenesis-like protein
nr
ID BAH00261.1
description unnamed protein product [Oryza sativa Japonica Group]
swissprot
ID -
description -
trembl
ID B7F6L3
description cDNA clone:J023043N15, full insert sequence OS=Oryza sativa subsp. japonica PE=2 SV=1
Gene Ontology
ID GO:0009269
description late embryogenesis abundant group 2 isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_34685: 131417-133972
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000033_070 0.0 - - unnamed protein product [Oryza sativa Japonica Group]
2 Hb_005129_010 0.1881234996 - - hypothetical protein VITISV_026364 [Vitis vinifera]
3 Hb_068569_010 0.1934184631 - - -
4 Hb_010964_020 0.1944243971 - - RNA helicase [Arabidopsis thaliana]
5 Hb_006794_010 0.1980684444 - - elicitor-responsive protein [Hevea brasiliensis]
6 Hb_003025_060 0.2132659967 - - PREDICTED: protein TOO MANY MOUTHS [Jatropha curcas]
7 Hb_035436_010 0.2162304303 - - PREDICTED: NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 10-B-like [Populus euphratica]
8 Hb_178620_010 0.2265421822 - - ADP-ribosylation factor, arf, putative [Ricinus communis]
9 Hb_025905_020 0.227793724 - - major allergen Pru ar 1-like [Jatropha curcas]
10 Hb_094437_040 0.2295480314 - - ankyrin repeat family protein, partial [Manihot esculenta]
11 Hb_183522_010 0.2315445919 - - Far upstream element-binding protein, putative [Ricinus communis]
12 Hb_002656_020 0.2343492196 desease resistance Gene Name: NB-ARC ATP binding protein, putative [Ricinus communis]
13 Hb_000053_030 0.2356855577 - - hypothetical protein CISIN_1g0010393mg, partial [Citrus sinensis]
14 Hb_108227_010 0.2387994099 - - RecName: Full=Profilin-2; AltName: Full=Pollen allergen Hev b 8.0102; AltName: Allergen=Hev b 8.0102 [Hevea brasiliensis]
15 Hb_114079_010 0.2390792415 - - hypothetical protein CICLE_v10008147mg [Citrus clementina]
16 Hb_011200_010 0.2432566388 - - -
17 Hb_001231_070 0.2470909538 - - -
18 Hb_005107_020 0.247774181 - - hypothetical protein JCGZ_25266 [Jatropha curcas]
19 Hb_001623_300 0.2489386265 - - PREDICTED: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13-B [Jatropha curcas]
20 Hb_000281_060 0.2503147134 - - Protein kinase APK1B, chloroplast precursor, putative [Ricinus communis]

Gene co-expression network

sample Hb_000033_070 Hb_000033_070 Hb_005129_010 Hb_005129_010 Hb_000033_070--Hb_005129_010 Hb_068569_010 Hb_068569_010 Hb_000033_070--Hb_068569_010 Hb_010964_020 Hb_010964_020 Hb_000033_070--Hb_010964_020 Hb_006794_010 Hb_006794_010 Hb_000033_070--Hb_006794_010 Hb_003025_060 Hb_003025_060 Hb_000033_070--Hb_003025_060 Hb_035436_010 Hb_035436_010 Hb_000033_070--Hb_035436_010 Hb_094437_040 Hb_094437_040 Hb_005129_010--Hb_094437_040 Hb_002078_500 Hb_002078_500 Hb_005129_010--Hb_002078_500 Hb_002656_020 Hb_002656_020 Hb_005129_010--Hb_002656_020 Hb_031866_050 Hb_031866_050 Hb_005129_010--Hb_031866_050 Hb_000053_030 Hb_000053_030 Hb_005129_010--Hb_000053_030 Hb_013358_100 Hb_013358_100 Hb_068569_010--Hb_013358_100 Hb_068569_010--Hb_010964_020 Hb_178620_010 Hb_178620_010 Hb_068569_010--Hb_178620_010 Hb_068569_010--Hb_000053_030 Hb_065841_010 Hb_065841_010 Hb_068569_010--Hb_065841_010 Hb_033385_010 Hb_033385_010 Hb_068569_010--Hb_033385_010 Hb_010964_020--Hb_178620_010 Hb_001623_300 Hb_001623_300 Hb_010964_020--Hb_001623_300 Hb_001623_290 Hb_001623_290 Hb_010964_020--Hb_001623_290 Hb_002192_090 Hb_002192_090 Hb_010964_020--Hb_002192_090 Hb_025905_020 Hb_025905_020 Hb_010964_020--Hb_025905_020 Hb_011200_010 Hb_011200_010 Hb_006794_010--Hb_011200_010 Hb_005107_020 Hb_005107_020 Hb_006794_010--Hb_005107_020 Hb_000025_080 Hb_000025_080 Hb_006794_010--Hb_000025_080 Hb_009119_010 Hb_009119_010 Hb_006794_010--Hb_009119_010 Hb_006162_020 Hb_006162_020 Hb_006794_010--Hb_006162_020 Hb_022614_010 Hb_022614_010 Hb_006794_010--Hb_022614_010 Hb_000876_010 Hb_000876_010 Hb_003025_060--Hb_000876_010 Hb_106873_020 Hb_106873_020 Hb_003025_060--Hb_106873_020 Hb_000589_230 Hb_000589_230 Hb_003025_060--Hb_000589_230 Hb_005723_070 Hb_005723_070 Hb_003025_060--Hb_005723_070 Hb_002126_020 Hb_002126_020 Hb_003025_060--Hb_002126_020 Hb_060054_010 Hb_060054_010 Hb_003025_060--Hb_060054_010 Hb_054541_010 Hb_054541_010 Hb_035436_010--Hb_054541_010 Hb_035436_010--Hb_013358_100 Hb_035436_010--Hb_010964_020 Hb_177152_010 Hb_177152_010 Hb_035436_010--Hb_177152_010 Hb_035436_010--Hb_178620_010 Hb_035436_010--Hb_025905_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
99.8894 10.9404 23.4125 313.134 37.6727 263.332
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
34.3397 5.90527 13.504 1.66186 13.4045

CAGE analysis