Hb_005129_010

Information

Type -
Description -
Location Contig5129: 5368-5619
Sequence    

Annotation

kegg
ID -
description -
nr
ID CAN67385.1
description hypothetical protein VITISV_026364 [Vitis vinifera]
swissprot
ID -
description -
trembl
ID A5B1A6
description Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_026364 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005129_010 0.0 - - hypothetical protein VITISV_026364 [Vitis vinifera]
2 Hb_000033_070 0.1881234996 - - unnamed protein product [Oryza sativa Japonica Group]
3 Hb_094437_040 0.2270031979 - - ankyrin repeat family protein, partial [Manihot esculenta]
4 Hb_002078_500 0.2310398835 - - conserved hypothetical protein [Ricinus communis]
5 Hb_002656_020 0.2319245737 desease resistance Gene Name: NB-ARC ATP binding protein, putative [Ricinus communis]
6 Hb_031866_050 0.2330157807 - - PREDICTED: uncharacterized protein LOC101756357 [Setaria italica]
7 Hb_000053_030 0.2343559256 - - hypothetical protein CISIN_1g0010393mg, partial [Citrus sinensis]
8 Hb_182516_010 0.2377312569 - - PREDICTED: uncharacterized protein LOC105641595 [Jatropha curcas]
9 Hb_000825_030 0.2400783125 - - zinc binding dehydrogenase, putative [Ricinus communis]
10 Hb_001252_200 0.2446216829 - - PREDICTED: uncharacterized protein LOC105640649 [Jatropha curcas]
11 Hb_150023_010 0.2454287712 - - 50S ribosomal protein L2, putative [Ricinus communis]
12 Hb_095192_010 0.2485116949 - - hypothetical protein VITISV_043980 [Vitis vinifera]
13 Hb_010964_020 0.2518743915 - - RNA helicase [Arabidopsis thaliana]
14 Hb_183522_010 0.2530679878 - - Far upstream element-binding protein, putative [Ricinus communis]
15 Hb_108227_010 0.2535864856 - - RecName: Full=Profilin-2; AltName: Full=Pollen allergen Hev b 8.0102; AltName: Allergen=Hev b 8.0102 [Hevea brasiliensis]
16 Hb_002079_040 0.2561356738 - - hypothetical protein VITISV_018542 [Vitis vinifera]
17 Hb_001623_300 0.2575343967 - - PREDICTED: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13-B [Jatropha curcas]
18 Hb_068569_010 0.2614975864 - - -
19 Hb_000317_140 0.2622354862 - - hypothetical protein CISIN_1g0019781mg, partial [Citrus sinensis]
20 Hb_006663_090 0.2640351164 - - hypothetical protein B456_010G1255001, partial [Gossypium raimondii]

Gene co-expression network

sample Hb_005129_010 Hb_005129_010 Hb_000033_070 Hb_000033_070 Hb_005129_010--Hb_000033_070 Hb_094437_040 Hb_094437_040 Hb_005129_010--Hb_094437_040 Hb_002078_500 Hb_002078_500 Hb_005129_010--Hb_002078_500 Hb_002656_020 Hb_002656_020 Hb_005129_010--Hb_002656_020 Hb_031866_050 Hb_031866_050 Hb_005129_010--Hb_031866_050 Hb_000053_030 Hb_000053_030 Hb_005129_010--Hb_000053_030 Hb_068569_010 Hb_068569_010 Hb_000033_070--Hb_068569_010 Hb_010964_020 Hb_010964_020 Hb_000033_070--Hb_010964_020 Hb_006794_010 Hb_006794_010 Hb_000033_070--Hb_006794_010 Hb_003025_060 Hb_003025_060 Hb_000033_070--Hb_003025_060 Hb_035436_010 Hb_035436_010 Hb_000033_070--Hb_035436_010 Hb_002611_030 Hb_002611_030 Hb_094437_040--Hb_002611_030 Hb_041025_010 Hb_041025_010 Hb_094437_040--Hb_041025_010 Hb_183522_010 Hb_183522_010 Hb_094437_040--Hb_183522_010 Hb_114079_010 Hb_114079_010 Hb_094437_040--Hb_114079_010 Hb_003642_020 Hb_003642_020 Hb_094437_040--Hb_003642_020 Hb_006422_030 Hb_006422_030 Hb_094437_040--Hb_006422_030 Hb_002079_040 Hb_002079_040 Hb_002078_500--Hb_002079_040 Hb_003030_040 Hb_003030_040 Hb_002078_500--Hb_003030_040 Hb_011037_020 Hb_011037_020 Hb_002078_500--Hb_011037_020 Hb_002815_050 Hb_002815_050 Hb_002078_500--Hb_002815_050 Hb_026228_010 Hb_026228_010 Hb_002078_500--Hb_026228_010 Hb_108227_010 Hb_108227_010 Hb_002078_500--Hb_108227_010 Hb_007273_020 Hb_007273_020 Hb_002656_020--Hb_007273_020 Hb_002656_020--Hb_108227_010 Hb_178620_010 Hb_178620_010 Hb_002656_020--Hb_178620_010 Hb_002656_020--Hb_068569_010 Hb_001623_290 Hb_001623_290 Hb_002656_020--Hb_001623_290 Hb_003551_010 Hb_003551_010 Hb_002656_020--Hb_003551_010 Hb_007447_020 Hb_007447_020 Hb_031866_050--Hb_007447_020 Hb_031866_050--Hb_003030_040 Hb_003656_150 Hb_003656_150 Hb_031866_050--Hb_003656_150 Hb_007188_030 Hb_007188_030 Hb_031866_050--Hb_007188_030 Hb_000683_090 Hb_000683_090 Hb_031866_050--Hb_000683_090 Hb_177103_010 Hb_177103_010 Hb_031866_050--Hb_177103_010 Hb_004466_060 Hb_004466_060 Hb_000053_030--Hb_004466_060 Hb_013358_090 Hb_013358_090 Hb_000053_030--Hb_013358_090 Hb_002192_090 Hb_002192_090 Hb_000053_030--Hb_002192_090 Hb_088163_010 Hb_088163_010 Hb_000053_030--Hb_088163_010 Hb_106415_010 Hb_106415_010 Hb_000053_030--Hb_106415_010 Hb_099878_050 Hb_099878_050 Hb_000053_030--Hb_099878_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
42.8319 3.24643 13.5623 136.329 24.4772 145.362
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
51.4731 5.86661 3.13273 1.84026 34.8705

CAGE analysis