Hb_004225_110

Information

Type -
Description -
Location Contig4225: 121931-130921
Sequence    

Annotation

kegg
ID rcu:RCOM_0545350
description Protein white, putative (EC:3.6.3.44)
nr
ID XP_012065103.1
description PREDICTED: ABC transporter G family member 28 [Jatropha curcas]
swissprot
ID Q9FF46
description ABC transporter G family member 28 OS=Arabidopsis thaliana GN=ABCG28 PE=3 SV=1
trembl
ID B9STW9
description Protein white, putative OS=Ricinus communis GN=RCOM_0545350 PE=3 SV=1
Gene Ontology
ID GO:0016021
description abc transporter g family member 28

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004225_110 0.0 - - PREDICTED: ABC transporter G family member 28 [Jatropha curcas]
2 Hb_017014_010 0.1602160146 - - PREDICTED: syntaxin-132-like isoform X1 [Jatropha curcas]
3 Hb_009913_040 0.1798696092 - - PREDICTED: transmembrane protein 87B [Jatropha curcas]
4 Hb_010003_010 0.181424402 - - PREDICTED: uncharacterized protein LOC105630174 isoform X2 [Jatropha curcas]
5 Hb_000049_080 0.1907445946 - - Receptor protein kinase CLAVATA1 precursor, putative [Ricinus communis]
6 Hb_000889_100 0.1908424549 - - PREDICTED: syntaxin-132-like isoform X2 [Sesamum indicum]
7 Hb_000094_290 0.1909708392 - - PREDICTED: outer envelope pore protein 24B, chloroplastic-like [Jatropha curcas]
8 Hb_011926_040 0.1915453089 - - PREDICTED: uncharacterized protein At1g04910 isoform X1 [Jatropha curcas]
9 Hb_001049_150 0.2020745631 - - PREDICTED: probable beta-1,3-galactosyltransferase 11 [Jatropha curcas]
10 Hb_002097_100 0.2028523332 - - protein with unknown function [Ricinus communis]
11 Hb_048702_010 0.2031973237 - - PREDICTED: ER membrane protein complex subunit 7 homolog isoform X1 [Jatropha curcas]
12 Hb_001474_040 0.2042081605 - - PREDICTED: protein ENHANCED DISEASE RESISTANCE 2 [Jatropha curcas]
13 Hb_001623_080 0.2069200228 - - calcineurin-like phosphoesterase [Manihot esculenta]
14 Hb_000281_060 0.2071432914 - - Protein kinase APK1B, chloroplast precursor, putative [Ricinus communis]
15 Hb_000622_350 0.2072792588 - - PREDICTED: protein ABIL1 [Jatropha curcas]
16 Hb_000226_070 0.2082961567 - - PREDICTED: pyrophosphate-energized vacuolar membrane proton pump [Jatropha curcas]
17 Hb_004899_340 0.2083707937 - - PREDICTED: probable polygalacturonase [Jatropha curcas]
18 Hb_007632_100 0.2102578242 transcription factor TF Family: NF-YB ccaat-binding transcription factor subunit A, putative [Ricinus communis]
19 Hb_000152_190 0.211282036 - - PREDICTED: K(+) efflux antiporter 5 [Jatropha curcas]
20 Hb_007192_020 0.2125534436 - - PREDICTED: high-affinity nitrate transporter 3.1-like [Jatropha curcas]

Gene co-expression network

sample Hb_004225_110 Hb_004225_110 Hb_017014_010 Hb_017014_010 Hb_004225_110--Hb_017014_010 Hb_009913_040 Hb_009913_040 Hb_004225_110--Hb_009913_040 Hb_010003_010 Hb_010003_010 Hb_004225_110--Hb_010003_010 Hb_000049_080 Hb_000049_080 Hb_004225_110--Hb_000049_080 Hb_000889_100 Hb_000889_100 Hb_004225_110--Hb_000889_100 Hb_000094_290 Hb_000094_290 Hb_004225_110--Hb_000094_290 Hb_017014_010--Hb_000889_100 Hb_002611_030 Hb_002611_030 Hb_017014_010--Hb_002611_030 Hb_017014_010--Hb_010003_010 Hb_100137_010 Hb_100137_010 Hb_017014_010--Hb_100137_010 Hb_048702_010 Hb_048702_010 Hb_017014_010--Hb_048702_010 Hb_000077_290 Hb_000077_290 Hb_017014_010--Hb_000077_290 Hb_011926_040 Hb_011926_040 Hb_009913_040--Hb_011926_040 Hb_000173_060 Hb_000173_060 Hb_009913_040--Hb_000173_060 Hb_004306_110 Hb_004306_110 Hb_009913_040--Hb_004306_110 Hb_002164_020 Hb_002164_020 Hb_009913_040--Hb_002164_020 Hb_000139_300 Hb_000139_300 Hb_009913_040--Hb_000139_300 Hb_008025_010 Hb_008025_010 Hb_009913_040--Hb_008025_010 Hb_010003_010--Hb_000889_100 Hb_010003_010--Hb_000094_290 Hb_010003_010--Hb_000077_290 Hb_000230_180 Hb_000230_180 Hb_010003_010--Hb_000230_180 Hb_051257_010 Hb_051257_010 Hb_010003_010--Hb_051257_010 Hb_005170_010 Hb_005170_010 Hb_010003_010--Hb_005170_010 Hb_053709_040 Hb_053709_040 Hb_000049_080--Hb_053709_040 Hb_000226_070 Hb_000226_070 Hb_000049_080--Hb_000226_070 Hb_002316_080 Hb_002316_080 Hb_000049_080--Hb_002316_080 Hb_001195_130 Hb_001195_130 Hb_000049_080--Hb_001195_130 Hb_001541_060 Hb_001541_060 Hb_000049_080--Hb_001541_060 Hb_000889_100--Hb_051257_010 Hb_000035_220 Hb_000035_220 Hb_000889_100--Hb_000035_220 Hb_164010_050 Hb_164010_050 Hb_000889_100--Hb_164010_050 Hb_000622_350 Hb_000622_350 Hb_000889_100--Hb_000622_350 Hb_000889_100--Hb_000094_290 Hb_000094_290--Hb_000173_060 Hb_000300_090 Hb_000300_090 Hb_000094_290--Hb_000300_090 Hb_000094_290--Hb_000622_350 Hb_000094_290--Hb_011926_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.163795 0.030274 0.251168 0.779348 0.103033 0.276476
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0134512 0.0317559 0.162176 0.0503607 0.339196

CAGE analysis