Hb_000049_080

Information

Type -
Description -
Location Contig49: 44063-47191
Sequence    

Annotation

kegg
ID rcu:RCOM_2078690
description Receptor protein kinase CLAVATA1 precursor, putative (EC:1.3.1.74 2.7.11.24)
nr
ID XP_002535195.1
description Receptor protein kinase CLAVATA1 precursor, putative [Ricinus communis]
swissprot
ID Q9M0G7
description Leucine-rich repeat receptor-like protein kinase PXL2 OS=Arabidopsis thaliana GN=PXL2 PE=2 SV=1
trembl
ID B9TAC6
description Receptor protein kinase CLAVATA1, putative OS=Ricinus communis GN=RCOM_2078690 PE=4 SV=1
Gene Ontology
ID GO:0005622
description leucine-rich repeat receptor-like protein kinase pxl2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_45246: 44783-44923
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000049_080 0.0 - - Receptor protein kinase CLAVATA1 precursor, putative [Ricinus communis]
2 Hb_004225_110 0.1907445946 - - PREDICTED: ABC transporter G family member 28 [Jatropha curcas]
3 Hb_053709_040 0.2036191183 - - putative actin-97 protein [Linum usitatissimum]
4 Hb_000226_070 0.208017432 - - PREDICTED: pyrophosphate-energized vacuolar membrane proton pump [Jatropha curcas]
5 Hb_002316_080 0.2088838308 - - PREDICTED: RING-H2 finger protein ATL46-like [Populus euphratica]
6 Hb_001195_130 0.2146403667 - - conserved hypothetical protein [Ricinus communis]
7 Hb_001541_060 0.2156726794 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000193_210 0.2161890852 - - PREDICTED: LOW QUALITY PROTEIN: galactoside 2-alpha-L-fucosyltransferase [Jatropha curcas]
9 Hb_000246_130 0.2171102814 - - tubulin alpha chain, putative [Ricinus communis]
10 Hb_066778_010 0.2184762975 - - -
11 Hb_000684_220 0.2184830067 - - PREDICTED: interactor of constitutive active ROPs 2, chloroplastic isoform X1 [Jatropha curcas]
12 Hb_007483_060 0.2197474778 desease resistance Gene Name: ABC_membrane multidrug resistance protein 1, 2, putative [Ricinus communis]
13 Hb_150486_010 0.2206810069 - - hypothetical protein CICLE_v100116733mg, partial [Citrus clementina]
14 Hb_000556_010 0.221269383 - - glycerate dehydrogenase, putative [Ricinus communis]
15 Hb_000236_160 0.2218259298 - - PREDICTED: UDP-glucuronate 4-epimerase 6 [Jatropha curcas]
16 Hb_025645_020 0.2219891563 - - PREDICTED: probable inactive leucine-rich repeat receptor-like protein kinase At1g66830 [Jatropha curcas]
17 Hb_030565_050 0.222156913 - - UDP-D-GLUCURONATE 4-EPIMERASE 6 family protein [Populus trichocarpa]
18 Hb_000922_400 0.2228779819 - - PREDICTED: uncharacterized protein LOC105640363 [Jatropha curcas]
19 Hb_000086_090 0.2232211837 - - PREDICTED: U-box domain-containing protein 3 [Jatropha curcas]
20 Hb_000098_170 0.2234155413 - - hypothetical protein JCGZ_06491 [Jatropha curcas]

Gene co-expression network

sample Hb_000049_080 Hb_000049_080 Hb_004225_110 Hb_004225_110 Hb_000049_080--Hb_004225_110 Hb_053709_040 Hb_053709_040 Hb_000049_080--Hb_053709_040 Hb_000226_070 Hb_000226_070 Hb_000049_080--Hb_000226_070 Hb_002316_080 Hb_002316_080 Hb_000049_080--Hb_002316_080 Hb_001195_130 Hb_001195_130 Hb_000049_080--Hb_001195_130 Hb_001541_060 Hb_001541_060 Hb_000049_080--Hb_001541_060 Hb_017014_010 Hb_017014_010 Hb_004225_110--Hb_017014_010 Hb_009913_040 Hb_009913_040 Hb_004225_110--Hb_009913_040 Hb_010003_010 Hb_010003_010 Hb_004225_110--Hb_010003_010 Hb_000889_100 Hb_000889_100 Hb_004225_110--Hb_000889_100 Hb_000094_290 Hb_000094_290 Hb_004225_110--Hb_000094_290 Hb_003207_150 Hb_003207_150 Hb_053709_040--Hb_003207_150 Hb_001366_170 Hb_001366_170 Hb_053709_040--Hb_001366_170 Hb_034726_010 Hb_034726_010 Hb_053709_040--Hb_034726_010 Hb_008185_020 Hb_008185_020 Hb_053709_040--Hb_008185_020 Hb_007632_100 Hb_007632_100 Hb_053709_040--Hb_007632_100 Hb_000177_110 Hb_000177_110 Hb_053709_040--Hb_000177_110 Hb_010812_110 Hb_010812_110 Hb_000226_070--Hb_010812_110 Hb_001474_040 Hb_001474_040 Hb_000226_070--Hb_001474_040 Hb_000300_230 Hb_000300_230 Hb_000226_070--Hb_000300_230 Hb_002129_020 Hb_002129_020 Hb_000226_070--Hb_002129_020 Hb_000300_520 Hb_000300_520 Hb_000226_070--Hb_000300_520 Hb_002046_150 Hb_002046_150 Hb_000226_070--Hb_002046_150 Hb_010883_180 Hb_010883_180 Hb_002316_080--Hb_010883_180 Hb_000246_130 Hb_000246_130 Hb_002316_080--Hb_000246_130 Hb_000098_170 Hb_000098_170 Hb_002316_080--Hb_000098_170 Hb_007483_060 Hb_007483_060 Hb_002316_080--Hb_007483_060 Hb_019516_060 Hb_019516_060 Hb_002316_080--Hb_019516_060 Hb_000086_090 Hb_000086_090 Hb_002316_080--Hb_000086_090 Hb_001847_050 Hb_001847_050 Hb_001195_130--Hb_001847_050 Hb_001579_300 Hb_001579_300 Hb_001195_130--Hb_001579_300 Hb_006925_050 Hb_006925_050 Hb_001195_130--Hb_006925_050 Hb_000856_400 Hb_000856_400 Hb_001195_130--Hb_000856_400 Hb_004730_020 Hb_004730_020 Hb_001195_130--Hb_004730_020 Hb_009222_110 Hb_009222_110 Hb_001195_130--Hb_009222_110 Hb_000108_180 Hb_000108_180 Hb_001541_060--Hb_000108_180 Hb_150486_010 Hb_150486_010 Hb_001541_060--Hb_150486_010 Hb_000251_120 Hb_000251_120 Hb_001541_060--Hb_000251_120 Hb_001366_110 Hb_001366_110 Hb_001541_060--Hb_001366_110 Hb_003177_040 Hb_003177_040 Hb_001541_060--Hb_003177_040 Hb_000236_230 Hb_000236_230 Hb_001541_060--Hb_000236_230
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.179685 0.074118 0.254233 1.12535 0.0249027 0.162087
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0458904 0.0658333 0.0318532 0.367137

CAGE analysis