Hb_001758_130

Information

Type -
Description -
Location Contig1758: 163295-165666
Sequence    

Annotation

kegg
ID rcu:RCOM_0306980
description Ran GTPase binding protein, putative
nr
ID KDP24565.1
description hypothetical protein JCGZ_25129 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JX35
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25129 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001758_130 0.0 - - hypothetical protein JCGZ_25129 [Jatropha curcas]
2 Hb_092062_010 0.1463108006 - - hypothetical protein JCGZ_25129 [Jatropha curcas]
3 Hb_031821_010 0.1672235759 - - ccd1, putative [Ricinus communis]
4 Hb_025905_010 0.1703636846 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO1 [Jatropha curcas]
5 Hb_003090_150 0.1808756518 - - PREDICTED: phosphatidylinositol:ceramide inositolphosphotransferase 1 [Jatropha curcas]
6 Hb_000671_060 0.1845252154 - - protein binding protein, putative [Ricinus communis]
7 Hb_001414_050 0.196312969 - - PREDICTED: probable S-adenosylmethionine-dependent methyltransferase At5g37970 [Jatropha curcas]
8 Hb_041895_040 0.202011376 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000139_180 0.2032226581 - - PREDICTED: putative leucine-rich repeat receptor-like serine/threonine-protein kinase At2g14440 [Jatropha curcas]
10 Hb_159809_050 0.2089133705 - - AT14A, putative [Ricinus communis]
11 Hb_001328_050 0.2092797303 - - PREDICTED: uncharacterized protein LOC105640854 [Jatropha curcas]
12 Hb_002431_010 0.212199118 - - PREDICTED: uncharacterized protein LOC104599557 isoform X2 [Nelumbo nucifera]
13 Hb_001196_080 0.2122629628 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At1g34300 [Jatropha curcas]
14 Hb_002030_110 0.2176993813 - - PREDICTED: RING-H2 finger protein ATL32-like [Jatropha curcas]
15 Hb_001769_110 0.2179197608 - - PREDICTED: probable metal-nicotianamine transporter YSL7 [Jatropha curcas]
16 Hb_001102_090 0.2182935859 - - PREDICTED: mitogen-activated protein kinase 19 [Jatropha curcas]
17 Hb_002942_090 0.2199066389 - - DNAJ heat shock N-terminal domain-containing protein, putative [Theobroma cacao]
18 Hb_004324_210 0.2199516647 - - RNA polymerase sigma factor rpoD, putative [Ricinus communis]
19 Hb_001518_060 0.2199597693 transcription factor TF Family: SBP PREDICTED: squamosa promoter-binding-like protein 9 [Jatropha curcas]
20 Hb_003090_160 0.2221668329 - - -

Gene co-expression network

sample Hb_001758_130 Hb_001758_130 Hb_092062_010 Hb_092062_010 Hb_001758_130--Hb_092062_010 Hb_031821_010 Hb_031821_010 Hb_001758_130--Hb_031821_010 Hb_025905_010 Hb_025905_010 Hb_001758_130--Hb_025905_010 Hb_003090_150 Hb_003090_150 Hb_001758_130--Hb_003090_150 Hb_000671_060 Hb_000671_060 Hb_001758_130--Hb_000671_060 Hb_001414_050 Hb_001414_050 Hb_001758_130--Hb_001414_050 Hb_092062_010--Hb_025905_010 Hb_092062_010--Hb_001414_050 Hb_031403_030 Hb_031403_030 Hb_092062_010--Hb_031403_030 Hb_021409_110 Hb_021409_110 Hb_092062_010--Hb_021409_110 Hb_003667_020 Hb_003667_020 Hb_092062_010--Hb_003667_020 Hb_031821_010--Hb_001414_050 Hb_002965_080 Hb_002965_080 Hb_031821_010--Hb_002965_080 Hb_041895_040 Hb_041895_040 Hb_031821_010--Hb_041895_040 Hb_001396_070 Hb_001396_070 Hb_031821_010--Hb_001396_070 Hb_031821_010--Hb_000671_060 Hb_001863_340 Hb_001863_340 Hb_025905_010--Hb_001863_340 Hb_025905_010--Hb_001414_050 Hb_025905_010--Hb_003090_150 Hb_000834_050 Hb_000834_050 Hb_025905_010--Hb_000834_050 Hb_000748_110 Hb_000748_110 Hb_025905_010--Hb_000748_110 Hb_003090_150--Hb_000671_060 Hb_001571_030 Hb_001571_030 Hb_003090_150--Hb_001571_030 Hb_002030_110 Hb_002030_110 Hb_003090_150--Hb_002030_110 Hb_001894_160 Hb_001894_160 Hb_003090_150--Hb_001894_160 Hb_011671_110 Hb_011671_110 Hb_003090_150--Hb_011671_110 Hb_033930_010 Hb_033930_010 Hb_003090_150--Hb_033930_010 Hb_000163_230 Hb_000163_230 Hb_000671_060--Hb_000163_230 Hb_002311_140 Hb_002311_140 Hb_000671_060--Hb_002311_140 Hb_012305_140 Hb_012305_140 Hb_000671_060--Hb_012305_140 Hb_001196_080 Hb_001196_080 Hb_000671_060--Hb_001196_080 Hb_000261_280 Hb_000261_280 Hb_000671_060--Hb_000261_280 Hb_001776_200 Hb_001776_200 Hb_001414_050--Hb_001776_200 Hb_006935_040 Hb_006935_040 Hb_001414_050--Hb_006935_040 Hb_000008_390 Hb_000008_390 Hb_001414_050--Hb_000008_390 Hb_011671_280 Hb_011671_280 Hb_001414_050--Hb_011671_280 Hb_001414_050--Hb_002965_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.697246 12.7114 14.5199 12.057 7.98593 1.99709
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.64662 1.91096 0.330816 0.350798 3.54533

CAGE analysis