Hb_002030_110

Information

Type -
Description -
Location Contig2030: 142768-143886
Sequence    

Annotation

kegg
ID tcc:TCM_001022
description RING/U-box superfamily protein, putative
nr
ID XP_012081632.1
description PREDICTED: RING-H2 finger protein ATL32-like [Jatropha curcas]
swissprot
ID Q8RXX9
description E3 ubiquitin-protein ligase ATL6 OS=Arabidopsis thaliana GN=ATL6 PE=1 SV=2
trembl
ID A0A067K3Z9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18673 PE=4 SV=1
Gene Ontology
ID GO:0005515
description e3 ubiquitin-protein ligase atl6-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002030_110 0.0 - - PREDICTED: RING-H2 finger protein ATL32-like [Jatropha curcas]
2 Hb_003090_150 0.1112174068 - - PREDICTED: phosphatidylinositol:ceramide inositolphosphotransferase 1 [Jatropha curcas]
3 Hb_001863_340 0.1233586991 - - PREDICTED: probable pectin methyltransferase QUA2 [Jatropha curcas]
4 Hb_001894_160 0.1287514523 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000622_210 0.1304737129 transcription factor TF Family: bZIP PREDICTED: common plant regulatory factor 1-like isoform X3 [Jatropha curcas]
6 Hb_033930_010 0.1351845549 - - PREDICTED: uncharacterized protein LOC105635519 [Jatropha curcas]
7 Hb_000680_180 0.1434453492 - - hypothetical protein JCGZ_15248 [Jatropha curcas]
8 Hb_011671_110 0.1480748908 - - PREDICTED: uncharacterized protein LOC105648628 [Jatropha curcas]
9 Hb_000318_410 0.148775523 - - PREDICTED: extra-large guanine nucleotide-binding protein 1-like [Jatropha curcas]
10 Hb_032202_050 0.149635153 transcription factor TF Family: TCP conserved hypothetical protein [Ricinus communis]
11 Hb_011930_120 0.1522201344 - - PREDICTED: uncharacterized protein LOC105649794 isoform X1 [Jatropha curcas]
12 Hb_001102_090 0.1536817629 - - PREDICTED: mitogen-activated protein kinase 19 [Jatropha curcas]
13 Hb_000336_180 0.1581044034 - - conserved hypothetical protein [Ricinus communis]
14 Hb_007224_010 0.158875239 - - PREDICTED: putative receptor-like protein kinase At4g00960 [Jatropha curcas]
15 Hb_001519_060 0.1598783786 - - PREDICTED: glutamyl-tRNA reductase 1, chloroplastic-like [Jatropha curcas]
16 Hb_001571_030 0.159880662 - - PREDICTED: uncharacterized protein LOC105640040 isoform X1 [Jatropha curcas]
17 Hb_000928_250 0.1605324048 - - calcium ion binding protein, putative [Ricinus communis]
18 Hb_001627_010 0.1617230414 - - Alpha-1,4-glucan-protein synthase [UDP-forming], putative [Ricinus communis]
19 Hb_005394_010 0.1617642512 - - PREDICTED: calmodulin-binding protein 25-like [Jatropha curcas]
20 Hb_000959_020 0.1623575124 - - Glucan endo-1,3-beta-glucosidase precursor, putative [Ricinus communis]

Gene co-expression network

sample Hb_002030_110 Hb_002030_110 Hb_003090_150 Hb_003090_150 Hb_002030_110--Hb_003090_150 Hb_001863_340 Hb_001863_340 Hb_002030_110--Hb_001863_340 Hb_001894_160 Hb_001894_160 Hb_002030_110--Hb_001894_160 Hb_000622_210 Hb_000622_210 Hb_002030_110--Hb_000622_210 Hb_033930_010 Hb_033930_010 Hb_002030_110--Hb_033930_010 Hb_000680_180 Hb_000680_180 Hb_002030_110--Hb_000680_180 Hb_000671_060 Hb_000671_060 Hb_003090_150--Hb_000671_060 Hb_001571_030 Hb_001571_030 Hb_003090_150--Hb_001571_030 Hb_003090_150--Hb_001894_160 Hb_011671_110 Hb_011671_110 Hb_003090_150--Hb_011671_110 Hb_003090_150--Hb_033930_010 Hb_000035_490 Hb_000035_490 Hb_001863_340--Hb_000035_490 Hb_001021_100 Hb_001021_100 Hb_001863_340--Hb_001021_100 Hb_000748_110 Hb_000748_110 Hb_001863_340--Hb_000748_110 Hb_021409_110 Hb_021409_110 Hb_001863_340--Hb_021409_110 Hb_001250_040 Hb_001250_040 Hb_001863_340--Hb_001250_040 Hb_001894_160--Hb_011671_110 Hb_005941_020 Hb_005941_020 Hb_001894_160--Hb_005941_020 Hb_001894_160--Hb_033930_010 Hb_000928_250 Hb_000928_250 Hb_001894_160--Hb_000928_250 Hb_015026_020 Hb_015026_020 Hb_001894_160--Hb_015026_020 Hb_001894_160--Hb_000622_210 Hb_000622_210--Hb_033930_010 Hb_161901_020 Hb_161901_020 Hb_000622_210--Hb_161901_020 Hb_000622_210--Hb_000928_250 Hb_000318_410 Hb_000318_410 Hb_000622_210--Hb_000318_410 Hb_000622_210--Hb_005941_020 Hb_033930_010--Hb_005941_020 Hb_033930_010--Hb_011671_110 Hb_033930_010--Hb_000318_410 Hb_000086_640 Hb_000086_640 Hb_033930_010--Hb_000086_640 Hb_011930_120 Hb_011930_120 Hb_000680_180--Hb_011930_120 Hb_010126_030 Hb_010126_030 Hb_000680_180--Hb_010126_030 Hb_002007_070 Hb_002007_070 Hb_000680_180--Hb_002007_070 Hb_000283_100 Hb_000283_100 Hb_000680_180--Hb_000283_100 Hb_001989_060 Hb_001989_060 Hb_000680_180--Hb_001989_060 Hb_001579_070 Hb_001579_070 Hb_000680_180--Hb_001579_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.58366 85.8474 91.8186 38.4341 12.8132 12.4835
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.11848 4.40886 3.7316 3.34215 32.4845

CAGE analysis