Hb_010407_160

Information

Type -
Description -
Location Contig10407: 165597-168831
Sequence    

Annotation

kegg
ID rcu:RCOM_1006710
description hypothetical protein
nr
ID XP_012069832.1
description PREDICTED: chromatin modification-related protein MEAF6 isoform X1 [Jatropha curcas]
swissprot
ID Q68ER9
description Chromatin modification-related protein MEAF6 OS=Xenopus tropicalis GN=meaf6 PE=2 SV=1
trembl
ID A0A067KVW0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02329 PE=4 SV=1
Gene Ontology
ID GO:0005773
description chromatin modification-related protein meaf6

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_01522: 165871-168852 , PASA_asmbl_01523: 168177-168852 , PASA_asmbl_01524: 167074-167399
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_010407_160 0.0 - - PREDICTED: chromatin modification-related protein MEAF6 isoform X1 [Jatropha curcas]
2 Hb_009771_060 0.1485173501 - - PREDICTED: 30S ribosomal protein S31, chloroplastic [Populus euphratica]
3 Hb_001930_030 0.1491344115 - - PREDICTED: 30S ribosomal protein S10, chloroplastic [Jatropha curcas]
4 Hb_000003_300 0.1565834876 - - PREDICTED: uncharacterized protein LOC105631182 [Jatropha curcas]
5 Hb_002194_050 0.157352004 - - PREDICTED: UPF0187 protein At3g61320, chloroplastic [Jatropha curcas]
6 Hb_155025_010 0.1579375774 - - PREDICTED: clustered mitochondria protein homolog [Jatropha curcas]
7 Hb_002265_010 0.1688090252 - - ef-hand calcium binding protein, putative [Ricinus communis]
8 Hb_005731_110 0.1718450998 - - PREDICTED: uncharacterized protein LOC105108367 isoform X1 [Populus euphratica]
9 Hb_000035_250 0.1741170461 - - PREDICTED: uncharacterized protein LOC105637544 [Jatropha curcas]
10 Hb_000836_350 0.1742602545 - - PREDICTED: uncharacterized protein LOC105642938 isoform X2 [Jatropha curcas]
11 Hb_007451_040 0.1742943002 - - PREDICTED: uncharacterized protein LOC105643411 [Jatropha curcas]
12 Hb_029622_030 0.176834674 - - ankyrin repeat-containing protein, putative [Ricinus communis]
13 Hb_001322_020 0.1777427408 - - PREDICTED: polycomb group protein VERNALIZATION 2-like isoform X2 [Populus euphratica]
14 Hb_010367_030 0.1790347937 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000975_220 0.1799406337 - - Histone H2B [Medicago truncatula]
16 Hb_006502_020 0.1801561471 - - PREDICTED: mitogen-activated protein kinase kinase kinase 1-like [Jatropha curcas]
17 Hb_000123_140 0.1803404631 - - PREDICTED: 21 kDa protein-like [Populus euphratica]
18 Hb_001369_610 0.1818953266 - - PREDICTED: protein LOW PSII ACCUMULATION 2, chloroplastic [Jatropha curcas]
19 Hb_001409_060 0.1822964952 transcription factor TF Family: TRAF Regulatory protein NPR1, putative [Ricinus communis]
20 Hb_005194_020 0.1840163753 - - PREDICTED: UPF0553 protein-like isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_010407_160 Hb_010407_160 Hb_009771_060 Hb_009771_060 Hb_010407_160--Hb_009771_060 Hb_001930_030 Hb_001930_030 Hb_010407_160--Hb_001930_030 Hb_000003_300 Hb_000003_300 Hb_010407_160--Hb_000003_300 Hb_002194_050 Hb_002194_050 Hb_010407_160--Hb_002194_050 Hb_155025_010 Hb_155025_010 Hb_010407_160--Hb_155025_010 Hb_002265_010 Hb_002265_010 Hb_010407_160--Hb_002265_010 Hb_003077_150 Hb_003077_150 Hb_009771_060--Hb_003077_150 Hb_007263_010 Hb_007263_010 Hb_009771_060--Hb_007263_010 Hb_009771_060--Hb_002194_050 Hb_005332_080 Hb_005332_080 Hb_009771_060--Hb_005332_080 Hb_007451_040 Hb_007451_040 Hb_009771_060--Hb_007451_040 Hb_000152_180 Hb_000152_180 Hb_009771_060--Hb_000152_180 Hb_006555_040 Hb_006555_040 Hb_001930_030--Hb_006555_040 Hb_005731_110 Hb_005731_110 Hb_001930_030--Hb_005731_110 Hb_000445_070 Hb_000445_070 Hb_001930_030--Hb_000445_070 Hb_015292_040 Hb_015292_040 Hb_001930_030--Hb_015292_040 Hb_004994_080 Hb_004994_080 Hb_001930_030--Hb_004994_080 Hb_000436_100 Hb_000436_100 Hb_001930_030--Hb_000436_100 Hb_000003_300--Hb_000436_100 Hb_004128_200 Hb_004128_200 Hb_000003_300--Hb_004128_200 Hb_005389_100 Hb_005389_100 Hb_000003_300--Hb_005389_100 Hb_000424_020 Hb_000424_020 Hb_000003_300--Hb_000424_020 Hb_002228_110 Hb_002228_110 Hb_000003_300--Hb_002228_110 Hb_000836_430 Hb_000836_430 Hb_000003_300--Hb_000836_430 Hb_008375_030 Hb_008375_030 Hb_002194_050--Hb_008375_030 Hb_004129_090 Hb_004129_090 Hb_002194_050--Hb_004129_090 Hb_001776_210 Hb_001776_210 Hb_002194_050--Hb_001776_210 Hb_002194_050--Hb_004994_080 Hb_002876_300 Hb_002876_300 Hb_002194_050--Hb_002876_300 Hb_000140_440 Hb_000140_440 Hb_155025_010--Hb_000140_440 Hb_155025_010--Hb_002265_010 Hb_006120_040 Hb_006120_040 Hb_155025_010--Hb_006120_040 Hb_155025_010--Hb_006555_040 Hb_000836_350 Hb_000836_350 Hb_155025_010--Hb_000836_350 Hb_001322_020 Hb_001322_020 Hb_155025_010--Hb_001322_020 Hb_006502_020 Hb_006502_020 Hb_002265_010--Hb_006502_020 Hb_005873_020 Hb_005873_020 Hb_002265_010--Hb_005873_020 Hb_002265_010--Hb_005731_110 Hb_000663_020 Hb_000663_020 Hb_002265_010--Hb_000663_020 Hb_065525_130 Hb_065525_130 Hb_002265_010--Hb_065525_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.83045 13.8603 29.1807 3.40556 5.40025 5.10594
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.02883 11.3425 2.43912 1.1897 10.2591

CAGE analysis