Hb_002107_090

Information

Type transcription factor
Description TF Family: bZIP
Location Contig2107: 64732-66132
Sequence    

Annotation

kegg
ID tcc:TCM_034270
description Basic-leucine zipper transcription factor family protein, putative
nr
ID XP_007017872.1
description Basic-leucine zipper transcription factor family protein, putative [Theobroma cacao]
swissprot
ID Q84JK2
description Protein FD OS=Arabidopsis thaliana GN=FD PE=1 SV=1
trembl
ID A0A061FEF1
description Basic-leucine zipper transcription factor family protein, putative OS=Theobroma cacao GN=TCM_034270 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002107_090 0.0 transcription factor TF Family: bZIP Basic-leucine zipper transcription factor family protein, putative [Theobroma cacao]
2 Hb_000345_260 0.1775825724 - - PREDICTED: BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1-like isoform X1 [Citrus sinensis]
3 Hb_002218_100 0.1950286469 - - PREDICTED: uncharacterized protein At2g34160 [Jatropha curcas]
4 Hb_000987_100 0.1979188229 - - unknown [Populus trichocarpa x Populus deltoides]
5 Hb_000123_140 0.202530703 - - PREDICTED: 21 kDa protein-like [Populus euphratica]
6 Hb_005194_040 0.2048635273 transcription factor TF Family: LOB LOB domain-containing protein, putative [Ricinus communis]
7 Hb_009411_040 0.210483879 - - -
8 Hb_005725_040 0.2154063558 - - -
9 Hb_003430_040 0.2333890643 - - spermidine synthase 1, putative [Ricinus communis]
10 Hb_010367_030 0.2339598291 - - conserved hypothetical protein [Ricinus communis]
11 Hb_009771_060 0.2347709487 - - PREDICTED: 30S ribosomal protein S31, chloroplastic [Populus euphratica]
12 Hb_010407_160 0.2372102867 - - PREDICTED: chromatin modification-related protein MEAF6 isoform X1 [Jatropha curcas]
13 Hb_010318_010 0.2377698398 - - PREDICTED: lactation elevated protein 1 isoform X1 [Jatropha curcas]
14 Hb_029622_030 0.2403797928 - - ankyrin repeat-containing protein, putative [Ricinus communis]
15 Hb_000345_290 0.2406050641 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
16 Hb_074792_010 0.2409851439 - - PREDICTED: probable lactoylglutathione lyase, chloroplast [Gossypium raimondii]
17 Hb_000230_480 0.2410565204 - - PREDICTED: endo-1,3;1,4-beta-D-glucanase-like [Jatropha curcas]
18 Hb_005217_030 0.2425447604 - - PREDICTED: probable transcriptional regulator SLK3 [Jatropha curcas]
19 Hb_000732_030 0.2506383502 - - conserved hypothetical protein [Ricinus communis]
20 Hb_003077_150 0.2510488231 transcription factor TF Family: SWI/SNF-BAF60b brg-1 associated factor, putative [Ricinus communis]

Gene co-expression network

sample Hb_002107_090 Hb_002107_090 Hb_000345_260 Hb_000345_260 Hb_002107_090--Hb_000345_260 Hb_002218_100 Hb_002218_100 Hb_002107_090--Hb_002218_100 Hb_000987_100 Hb_000987_100 Hb_002107_090--Hb_000987_100 Hb_000123_140 Hb_000123_140 Hb_002107_090--Hb_000123_140 Hb_005194_040 Hb_005194_040 Hb_002107_090--Hb_005194_040 Hb_009411_040 Hb_009411_040 Hb_002107_090--Hb_009411_040 Hb_000345_260--Hb_000987_100 Hb_000230_480 Hb_000230_480 Hb_000345_260--Hb_000230_480 Hb_004117_190 Hb_004117_190 Hb_000345_260--Hb_004117_190 Hb_001195_640 Hb_001195_640 Hb_000345_260--Hb_001195_640 Hb_002411_060 Hb_002411_060 Hb_000345_260--Hb_002411_060 Hb_176472_020 Hb_176472_020 Hb_002218_100--Hb_176472_020 Hb_000563_440 Hb_000563_440 Hb_002218_100--Hb_000563_440 Hb_002218_100--Hb_000123_140 Hb_000120_350 Hb_000120_350 Hb_002218_100--Hb_000120_350 Hb_000959_190 Hb_000959_190 Hb_002218_100--Hb_000959_190 Hb_004125_060 Hb_004125_060 Hb_002218_100--Hb_004125_060 Hb_001198_130 Hb_001198_130 Hb_000987_100--Hb_001198_130 Hb_082655_010 Hb_082655_010 Hb_000987_100--Hb_082655_010 Hb_001168_070 Hb_001168_070 Hb_000987_100--Hb_001168_070 Hb_002045_090 Hb_002045_090 Hb_000987_100--Hb_002045_090 Hb_000442_040 Hb_000442_040 Hb_000987_100--Hb_000442_040 Hb_000211_040 Hb_000211_040 Hb_000123_140--Hb_000211_040 Hb_000123_140--Hb_000959_190 Hb_001322_020 Hb_001322_020 Hb_000123_140--Hb_001322_020 Hb_155025_010 Hb_155025_010 Hb_000123_140--Hb_155025_010 Hb_000123_140--Hb_000120_350 Hb_006935_040 Hb_006935_040 Hb_000123_140--Hb_006935_040 Hb_000424_070 Hb_000424_070 Hb_005194_040--Hb_000424_070 Hb_029622_030 Hb_029622_030 Hb_005194_040--Hb_029622_030 Hb_005194_040--Hb_006935_040 Hb_000313_290 Hb_000313_290 Hb_005194_040--Hb_000313_290 Hb_006846_160 Hb_006846_160 Hb_005194_040--Hb_006846_160 Hb_000300_710 Hb_000300_710 Hb_005194_040--Hb_000300_710 Hb_000684_100 Hb_000684_100 Hb_009411_040--Hb_000684_100 Hb_161901_020 Hb_161901_020 Hb_009411_040--Hb_161901_020 Hb_000011_050 Hb_000011_050 Hb_009411_040--Hb_000011_050 Hb_000212_300 Hb_000212_300 Hb_009411_040--Hb_000212_300 Hb_002194_050 Hb_002194_050 Hb_009411_040--Hb_002194_050 Hb_001369_030 Hb_001369_030 Hb_009411_040--Hb_001369_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.986687 1.91737 6.57022 1.06899 0.738283 0.460888
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.84601 0.589052 0.144677 0.0473634 1.20608

CAGE analysis