Hb_001168_070

Information

Type -
Description -
Location Contig1168: 45659-51859
Sequence    

Annotation

kegg
ID rcu:RCOM_1292200
description Disease resistance protein RGA2, putative (EC:3.1.3.16)
nr
ID KDP42480.1
description hypothetical protein JCGZ_00277 [Jatropha curcas]
swissprot
ID Q7XA39
description Putative disease resistance protein RGA4 OS=Solanum bulbocastanum GN=RGA4 PE=2 SV=1
trembl
ID A0A067LDA6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00277 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_05221: 46033-46299
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001168_070 0.0 - - hypothetical protein JCGZ_00277 [Jatropha curcas]
2 Hb_004361_060 0.1032886153 - - PREDICTED: uncharacterized protein LOC105636705 [Jatropha curcas]
3 Hb_004577_010 0.1209203501 - - PREDICTED: transmembrane protein 45A [Prunus mume]
4 Hb_000445_210 0.1274729313 transcription factor TF Family: PHD PREDICTED: uncharacterized protein LOC105639010 [Jatropha curcas]
5 Hb_002249_170 0.1303612047 - - copine, putative [Ricinus communis]
6 Hb_080147_020 0.1387467757 - - 3-hydroxyacyl-CoA dehyrogenase, putative [Ricinus communis]
7 Hb_000086_640 0.1430552143 - - Phytosulfokine receptor precursor, putative [Ricinus communis]
8 Hb_001318_150 0.1444087852 - - PREDICTED: shaggy-related protein kinase alpha-like [Jatropha curcas]
9 Hb_054865_050 0.1475601371 - - calcium-dependent protein kinase, putative [Ricinus communis]
10 Hb_104920_010 0.1478596332 - - hypothetical protein VITISV_031859 [Vitis vinifera]
11 Hb_005941_020 0.1491684848 - - PREDICTED: double-stranded RNA-binding protein 2 [Jatropha curcas]
12 Hb_002965_080 0.152722582 transcription factor TF Family: C2C2-GATA PREDICTED: GATA transcription factor 15-like [Jatropha curcas]
13 Hb_001729_020 0.1548934306 transcription factor TF Family: C3H zinc finger protein, putative [Ricinus communis]
14 Hb_011671_110 0.1553547476 - - PREDICTED: uncharacterized protein LOC105648628 [Jatropha curcas]
15 Hb_001247_210 0.1570552974 - - conserved hypothetical protein [Ricinus communis]
16 Hb_001369_030 0.1578957149 - - PREDICTED: ceramide kinase isoform X1 [Jatropha curcas]
17 Hb_004108_210 0.1582563992 - - phenazine biosynthesis protein, putative [Ricinus communis]
18 Hb_003747_050 0.15867909 - - PREDICTED: WD repeat-containing protein LWD1 [Jatropha curcas]
19 Hb_000098_150 0.1590608493 - - DNA helicase hus2, putative [Ricinus communis]
20 Hb_161901_020 0.1596271441 - - PREDICTED: serine/threonine-protein kinase AFC2 isoform X2 [Vitis vinifera]

Gene co-expression network

sample Hb_001168_070 Hb_001168_070 Hb_004361_060 Hb_004361_060 Hb_001168_070--Hb_004361_060 Hb_004577_010 Hb_004577_010 Hb_001168_070--Hb_004577_010 Hb_000445_210 Hb_000445_210 Hb_001168_070--Hb_000445_210 Hb_002249_170 Hb_002249_170 Hb_001168_070--Hb_002249_170 Hb_080147_020 Hb_080147_020 Hb_001168_070--Hb_080147_020 Hb_000086_640 Hb_000086_640 Hb_001168_070--Hb_000086_640 Hb_004361_060--Hb_004577_010 Hb_004361_060--Hb_080147_020 Hb_001663_130 Hb_001663_130 Hb_004361_060--Hb_001663_130 Hb_004361_060--Hb_002249_170 Hb_000098_180 Hb_000098_180 Hb_004361_060--Hb_000098_180 Hb_000300_560 Hb_000300_560 Hb_004577_010--Hb_000300_560 Hb_011188_010 Hb_011188_010 Hb_004577_010--Hb_011188_010 Hb_004162_220 Hb_004162_220 Hb_004577_010--Hb_004162_220 Hb_004577_010--Hb_001663_130 Hb_002686_410 Hb_002686_410 Hb_004577_010--Hb_002686_410 Hb_003058_140 Hb_003058_140 Hb_004577_010--Hb_003058_140 Hb_008120_040 Hb_008120_040 Hb_000445_210--Hb_008120_040 Hb_153553_040 Hb_153553_040 Hb_000445_210--Hb_153553_040 Hb_000445_210--Hb_004577_010 Hb_000270_600 Hb_000270_600 Hb_000445_210--Hb_000270_600 Hb_155025_010 Hb_155025_010 Hb_000445_210--Hb_155025_010 Hb_015807_080 Hb_015807_080 Hb_000445_210--Hb_015807_080 Hb_001318_150 Hb_001318_150 Hb_002249_170--Hb_001318_150 Hb_054865_050 Hb_054865_050 Hb_002249_170--Hb_054865_050 Hb_003106_200 Hb_003106_200 Hb_002249_170--Hb_003106_200 Hb_011671_110 Hb_011671_110 Hb_002249_170--Hb_011671_110 Hb_086639_050 Hb_086639_050 Hb_002249_170--Hb_086639_050 Hb_001247_210 Hb_001247_210 Hb_002249_170--Hb_001247_210 Hb_000567_090 Hb_000567_090 Hb_080147_020--Hb_000567_090 Hb_002411_160 Hb_002411_160 Hb_080147_020--Hb_002411_160 Hb_080147_020--Hb_086639_050 Hb_000098_150 Hb_000098_150 Hb_080147_020--Hb_000098_150 Hb_001221_580 Hb_001221_580 Hb_080147_020--Hb_001221_580 Hb_004108_210 Hb_004108_210 Hb_080147_020--Hb_004108_210 Hb_000035_490 Hb_000035_490 Hb_000086_640--Hb_000035_490 Hb_132840_020 Hb_132840_020 Hb_000086_640--Hb_132840_020 Hb_000086_640--Hb_015807_080 Hb_033930_010 Hb_033930_010 Hb_000086_640--Hb_033930_010 Hb_005941_020 Hb_005941_020 Hb_000086_640--Hb_005941_020 Hb_000753_140 Hb_000753_140 Hb_000086_640--Hb_000753_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.758004 1.54595 2.73293 1.00788 0.204207 0.101326
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.497476 0.312785 0.136963 0.865326 1.06097

CAGE analysis