Hb_004361_060

Information

Type -
Description -
Location Contig4361: 71578-79193
Sequence    

Annotation

kegg
ID rcu:RCOM_0724220
description catalytic, putative
nr
ID XP_012075434.1
description PREDICTED: uncharacterized protein LOC105636705 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID B9SFW5
description Catalytic, putative OS=Ricinus communis GN=RCOM_0724220 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_42465: 71787-72456 , PASA_asmbl_42467: 78551-79135
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004361_060 0.0 - - PREDICTED: uncharacterized protein LOC105636705 [Jatropha curcas]
2 Hb_001168_070 0.1032886153 - - hypothetical protein JCGZ_00277 [Jatropha curcas]
3 Hb_004577_010 0.1147635814 - - PREDICTED: transmembrane protein 45A [Prunus mume]
4 Hb_080147_020 0.1242205675 - - 3-hydroxyacyl-CoA dehyrogenase, putative [Ricinus communis]
5 Hb_001663_130 0.1275031923 - - acyl-CoA thioesterase, putative [Ricinus communis]
6 Hb_002249_170 0.1286923838 - - copine, putative [Ricinus communis]
7 Hb_000098_180 0.1326086685 - - PREDICTED: uncharacterized protein LOC105633342 isoform X2 [Jatropha curcas]
8 Hb_001117_080 0.1394480113 - - PREDICTED: mitogen-activated protein kinase kinase 2 isoform X1 [Jatropha curcas]
9 Hb_000477_070 0.1405271062 - - histone h2a, putative [Ricinus communis]
10 Hb_000015_150 0.1421863965 - - Ubiquitin-conjugating enzyme E2 7 family protein [Populus trichocarpa]
11 Hb_002432_050 0.1423841831 - - PREDICTED: uncharacterized protein LOC105648523 [Jatropha curcas]
12 Hb_000445_210 0.144061197 transcription factor TF Family: PHD PREDICTED: uncharacterized protein LOC105639010 [Jatropha curcas]
13 Hb_000086_270 0.144525354 - - hypothetical protein POPTR_0002s03730g [Populus trichocarpa]
14 Hb_002259_220 0.1446546976 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 66 [Jatropha curcas]
15 Hb_011188_010 0.1450017039 - - PREDICTED: uncharacterized protein LOC105642145 isoform X1 [Jatropha curcas]
16 Hb_001160_110 0.145539949 - - PREDICTED: kinesin-related protein 13 [Jatropha curcas]
17 Hb_001824_030 0.1483559775 - - plant sec1, putative [Ricinus communis]
18 Hb_004108_210 0.1485835463 - - phenazine biosynthesis protein, putative [Ricinus communis]
19 Hb_002849_050 0.1493828386 - - PREDICTED: probable serine/threonine-protein kinase At1g01540 [Jatropha curcas]
20 Hb_027043_010 0.1501227325 - - PREDICTED: glycerophosphodiester phosphodiesterase GDPD4 [Jatropha curcas]

Gene co-expression network

sample Hb_004361_060 Hb_004361_060 Hb_001168_070 Hb_001168_070 Hb_004361_060--Hb_001168_070 Hb_004577_010 Hb_004577_010 Hb_004361_060--Hb_004577_010 Hb_080147_020 Hb_080147_020 Hb_004361_060--Hb_080147_020 Hb_001663_130 Hb_001663_130 Hb_004361_060--Hb_001663_130 Hb_002249_170 Hb_002249_170 Hb_004361_060--Hb_002249_170 Hb_000098_180 Hb_000098_180 Hb_004361_060--Hb_000098_180 Hb_001168_070--Hb_004577_010 Hb_000445_210 Hb_000445_210 Hb_001168_070--Hb_000445_210 Hb_001168_070--Hb_002249_170 Hb_001168_070--Hb_080147_020 Hb_000086_640 Hb_000086_640 Hb_001168_070--Hb_000086_640 Hb_000300_560 Hb_000300_560 Hb_004577_010--Hb_000300_560 Hb_011188_010 Hb_011188_010 Hb_004577_010--Hb_011188_010 Hb_004162_220 Hb_004162_220 Hb_004577_010--Hb_004162_220 Hb_004577_010--Hb_001663_130 Hb_002686_410 Hb_002686_410 Hb_004577_010--Hb_002686_410 Hb_003058_140 Hb_003058_140 Hb_004577_010--Hb_003058_140 Hb_000567_090 Hb_000567_090 Hb_080147_020--Hb_000567_090 Hb_002411_160 Hb_002411_160 Hb_080147_020--Hb_002411_160 Hb_086639_050 Hb_086639_050 Hb_080147_020--Hb_086639_050 Hb_000098_150 Hb_000098_150 Hb_080147_020--Hb_000098_150 Hb_001221_580 Hb_001221_580 Hb_080147_020--Hb_001221_580 Hb_004108_210 Hb_004108_210 Hb_080147_020--Hb_004108_210 Hb_001663_130--Hb_000300_560 Hb_003894_060 Hb_003894_060 Hb_001663_130--Hb_003894_060 Hb_001160_110 Hb_001160_110 Hb_001663_130--Hb_001160_110 Hb_007594_080 Hb_007594_080 Hb_001663_130--Hb_007594_080 Hb_002447_050 Hb_002447_050 Hb_001663_130--Hb_002447_050 Hb_001663_130--Hb_011188_010 Hb_001318_150 Hb_001318_150 Hb_002249_170--Hb_001318_150 Hb_054865_050 Hb_054865_050 Hb_002249_170--Hb_054865_050 Hb_003106_200 Hb_003106_200 Hb_002249_170--Hb_003106_200 Hb_011671_110 Hb_011671_110 Hb_002249_170--Hb_011671_110 Hb_002249_170--Hb_086639_050 Hb_001247_210 Hb_001247_210 Hb_002249_170--Hb_001247_210 Hb_004218_130 Hb_004218_130 Hb_000098_180--Hb_004218_130 Hb_000589_170 Hb_000589_170 Hb_000098_180--Hb_000589_170 Hb_001117_080 Hb_001117_080 Hb_000098_180--Hb_001117_080 Hb_009296_020 Hb_009296_020 Hb_000098_180--Hb_009296_020 Hb_002259_220 Hb_002259_220 Hb_000098_180--Hb_002259_220 Hb_000098_180--Hb_011188_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.21904 1.73479 3.78027 1.86233 0.332485 0.295218
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.300045 0.417685 0.309767 1.43804 1.53424

CAGE analysis