Hb_001198_130

Information

Type -
Description -
Location Contig1198: 81074-90334
Sequence    

Annotation

kegg
ID -
description -
nr
ID XP_012071314.1
description PREDICTED: potassium channel AKT2/3 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KRU4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04999 PE=4 SV=1
Gene Ontology
ID GO:0005249
description potassium channel akt2 3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_05944: 83444-90179
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001198_130 0.0 - - PREDICTED: potassium channel AKT2/3 [Jatropha curcas]
2 Hb_000987_100 0.1468068373 - - unknown [Populus trichocarpa x Populus deltoides]
3 Hb_000027_140 0.1549750519 - - PREDICTED: uncharacterized protein LOC105642063 [Jatropha curcas]
4 Hb_001168_070 0.1884343179 - - hypothetical protein JCGZ_00277 [Jatropha curcas]
5 Hb_082655_010 0.1915918135 - - rhodanese-like domain-containing family protein [Populus trichocarpa]
6 Hb_000923_100 0.1976486909 - - chloride channel clc, putative [Ricinus communis]
7 Hb_001396_120 0.1990312098 transcription factor TF Family: SBP PREDICTED: squamosa promoter-binding-like protein 16 [Jatropha curcas]
8 Hb_007164_030 0.2003462691 transcription factor TF Family: Orphans two-component system sensor histidine kinase/response regulator, putative [Ricinus communis]
9 Hb_002965_080 0.200486782 transcription factor TF Family: C2C2-GATA PREDICTED: GATA transcription factor 15-like [Jatropha curcas]
10 Hb_005305_120 0.2051446439 - - PREDICTED: calcium-dependent protein kinase 8-like [Jatropha curcas]
11 Hb_000445_210 0.2085819179 transcription factor TF Family: PHD PREDICTED: uncharacterized protein LOC105639010 [Jatropha curcas]
12 Hb_011310_150 0.2091571617 - - PREDICTED: SPX domain-containing protein 1-like [Jatropha curcas]
13 Hb_000757_130 0.2132118527 - - conserved hypothetical protein [Ricinus communis]
14 Hb_002983_110 0.214957377 - - PREDICTED: uncharacterized protein LOC105634780 [Jatropha curcas]
15 Hb_009411_040 0.2150281542 - - -
16 Hb_007224_010 0.2152844917 - - PREDICTED: putative receptor-like protein kinase At4g00960 [Jatropha curcas]
17 Hb_003750_130 0.2156636602 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000345_260 0.2172262542 - - PREDICTED: BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1-like isoform X1 [Citrus sinensis]
19 Hb_001621_050 0.21741366 - - PREDICTED: uncharacterized protein LOC105647273 [Jatropha curcas]
20 Hb_003640_050 0.2216224859 - - PREDICTED: protein LUTEIN DEFICIENT 5, chloroplastic isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_001198_130 Hb_001198_130 Hb_000987_100 Hb_000987_100 Hb_001198_130--Hb_000987_100 Hb_000027_140 Hb_000027_140 Hb_001198_130--Hb_000027_140 Hb_001168_070 Hb_001168_070 Hb_001198_130--Hb_001168_070 Hb_082655_010 Hb_082655_010 Hb_001198_130--Hb_082655_010 Hb_000923_100 Hb_000923_100 Hb_001198_130--Hb_000923_100 Hb_001396_120 Hb_001396_120 Hb_001198_130--Hb_001396_120 Hb_000345_260 Hb_000345_260 Hb_000987_100--Hb_000345_260 Hb_000987_100--Hb_082655_010 Hb_000987_100--Hb_001168_070 Hb_002045_090 Hb_002045_090 Hb_000987_100--Hb_002045_090 Hb_000442_040 Hb_000442_040 Hb_000987_100--Hb_000442_040 Hb_002965_080 Hb_002965_080 Hb_000027_140--Hb_002965_080 Hb_000329_740 Hb_000329_740 Hb_000027_140--Hb_000329_740 Hb_001386_020 Hb_001386_020 Hb_000027_140--Hb_001386_020 Hb_000027_140--Hb_000923_100 Hb_000027_140--Hb_001168_070 Hb_004361_060 Hb_004361_060 Hb_001168_070--Hb_004361_060 Hb_004577_010 Hb_004577_010 Hb_001168_070--Hb_004577_010 Hb_000445_210 Hb_000445_210 Hb_001168_070--Hb_000445_210 Hb_002249_170 Hb_002249_170 Hb_001168_070--Hb_002249_170 Hb_080147_020 Hb_080147_020 Hb_001168_070--Hb_080147_020 Hb_000086_640 Hb_000086_640 Hb_001168_070--Hb_000086_640 Hb_017895_060 Hb_017895_060 Hb_082655_010--Hb_017895_060 Hb_082655_010--Hb_002045_090 Hb_000958_120 Hb_000958_120 Hb_082655_010--Hb_000958_120 Hb_005694_050 Hb_005694_050 Hb_082655_010--Hb_005694_050 Hb_005074_050 Hb_005074_050 Hb_082655_010--Hb_005074_050 Hb_009545_070 Hb_009545_070 Hb_082655_010--Hb_009545_070 Hb_009862_020 Hb_009862_020 Hb_000923_100--Hb_009862_020 Hb_000077_160 Hb_000077_160 Hb_000923_100--Hb_000077_160 Hb_002835_280 Hb_002835_280 Hb_000923_100--Hb_002835_280 Hb_000336_180 Hb_000336_180 Hb_000923_100--Hb_000336_180 Hb_000203_200 Hb_000203_200 Hb_000923_100--Hb_000203_200 Hb_121089_020 Hb_121089_020 Hb_000923_100--Hb_121089_020 Hb_001519_060 Hb_001519_060 Hb_001396_120--Hb_001519_060 Hb_001396_120--Hb_000336_180 Hb_001396_120--Hb_002965_080 Hb_002014_050 Hb_002014_050 Hb_001396_120--Hb_002014_050 Hb_000009_200 Hb_000009_200 Hb_001396_120--Hb_000009_200 Hb_005725_280 Hb_005725_280 Hb_001396_120--Hb_005725_280
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.36882 13.4855 19.7578 9.40691 0.487082 0.38659
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.2058 2.82758 0.513683 1.8817 12.8019

CAGE analysis