Hb_000027_140

Information

Type -
Description -
Location Contig27: 235712-236173
Sequence    

Annotation

kegg
ID rcu:RCOM_1310520
description hypothetical protein
nr
ID XP_012082145.1
description PREDICTED: uncharacterized protein LOC105642063 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067K324
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18374 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000027_140 0.0 - - PREDICTED: uncharacterized protein LOC105642063 [Jatropha curcas]
2 Hb_002965_080 0.1394364963 transcription factor TF Family: C2C2-GATA PREDICTED: GATA transcription factor 15-like [Jatropha curcas]
3 Hb_001198_130 0.1549750519 - - PREDICTED: potassium channel AKT2/3 [Jatropha curcas]
4 Hb_000329_740 0.1556006524 transcription factor TF Family: MYB PREDICTED: myb-related protein MYBAS2 [Jatropha curcas]
5 Hb_001386_020 0.1572875595 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000923_100 0.1652706446 - - chloride channel clc, putative [Ricinus communis]
7 Hb_001168_070 0.1656118296 - - hypothetical protein JCGZ_00277 [Jatropha curcas]
8 Hb_000336_180 0.1676598533 - - conserved hypothetical protein [Ricinus communis]
9 Hb_001247_210 0.1711371017 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000086_640 0.1711975539 - - Phytosulfokine receptor precursor, putative [Ricinus communis]
11 Hb_001103_060 0.1717590706 - - proton-dependent oligopeptide transport family protein [Populus trichocarpa]
12 Hb_008120_040 0.1725248435 - - PREDICTED: putative serine/threonine-protein kinase isoform X1 [Jatropha curcas]
13 Hb_000453_280 0.1756605929 - - negative cofactor 2 transcriptional co-repressor, putative [Ricinus communis]
14 Hb_001396_120 0.1763381281 transcription factor TF Family: SBP PREDICTED: squamosa promoter-binding-like protein 16 [Jatropha curcas]
15 Hb_004577_010 0.1765621185 - - PREDICTED: transmembrane protein 45A [Prunus mume]
16 Hb_002804_010 0.1781757222 - - PREDICTED: U-box domain-containing protein 33-like [Jatropha curcas]
17 Hb_007416_260 0.1828073346 - - PREDICTED: E3 ubiquitin-protein ligase RNF12-A-like [Jatropha curcas]
18 Hb_000170_160 0.183443398 - - PREDICTED: NAD kinase 2, chloroplastic [Jatropha curcas]
19 Hb_001950_110 0.1845667146 transcription factor TF Family: MYB PREDICTED: transcription factor MYB44 [Jatropha curcas]
20 Hb_015807_080 0.1849944505 - - PREDICTED: helicase protein MOM1-like [Jatropha curcas]

Gene co-expression network

sample Hb_000027_140 Hb_000027_140 Hb_002965_080 Hb_002965_080 Hb_000027_140--Hb_002965_080 Hb_001198_130 Hb_001198_130 Hb_000027_140--Hb_001198_130 Hb_000329_740 Hb_000329_740 Hb_000027_140--Hb_000329_740 Hb_001386_020 Hb_001386_020 Hb_000027_140--Hb_001386_020 Hb_000923_100 Hb_000923_100 Hb_000027_140--Hb_000923_100 Hb_001168_070 Hb_001168_070 Hb_000027_140--Hb_001168_070 Hb_001519_060 Hb_001519_060 Hb_002965_080--Hb_001519_060 Hb_002249_170 Hb_002249_170 Hb_002965_080--Hb_002249_170 Hb_011671_110 Hb_011671_110 Hb_002965_080--Hb_011671_110 Hb_001396_120 Hb_001396_120 Hb_002965_080--Hb_001396_120 Hb_007224_010 Hb_007224_010 Hb_002965_080--Hb_007224_010 Hb_000336_180 Hb_000336_180 Hb_002965_080--Hb_000336_180 Hb_000987_100 Hb_000987_100 Hb_001198_130--Hb_000987_100 Hb_001198_130--Hb_001168_070 Hb_082655_010 Hb_082655_010 Hb_001198_130--Hb_082655_010 Hb_001198_130--Hb_000923_100 Hb_001198_130--Hb_001396_120 Hb_000329_740--Hb_002965_080 Hb_000329_740--Hb_001168_070 Hb_000086_640 Hb_000086_640 Hb_000329_740--Hb_000086_640 Hb_008120_040 Hb_008120_040 Hb_000329_740--Hb_008120_040 Hb_004125_060 Hb_004125_060 Hb_000329_740--Hb_004125_060 Hb_001386_020--Hb_000086_640 Hb_000753_140 Hb_000753_140 Hb_001386_020--Hb_000753_140 Hb_132840_020 Hb_132840_020 Hb_001386_020--Hb_132840_020 Hb_000035_490 Hb_000035_490 Hb_001386_020--Hb_000035_490 Hb_002383_050 Hb_002383_050 Hb_001386_020--Hb_002383_050 Hb_011381_070 Hb_011381_070 Hb_001386_020--Hb_011381_070 Hb_009862_020 Hb_009862_020 Hb_000923_100--Hb_009862_020 Hb_000077_160 Hb_000077_160 Hb_000923_100--Hb_000077_160 Hb_002835_280 Hb_002835_280 Hb_000923_100--Hb_002835_280 Hb_000923_100--Hb_000336_180 Hb_000203_200 Hb_000203_200 Hb_000923_100--Hb_000203_200 Hb_121089_020 Hb_121089_020 Hb_000923_100--Hb_121089_020 Hb_004361_060 Hb_004361_060 Hb_001168_070--Hb_004361_060 Hb_004577_010 Hb_004577_010 Hb_001168_070--Hb_004577_010 Hb_000445_210 Hb_000445_210 Hb_001168_070--Hb_000445_210 Hb_001168_070--Hb_002249_170 Hb_080147_020 Hb_080147_020 Hb_001168_070--Hb_080147_020 Hb_001168_070--Hb_000086_640
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.653018 3.05722 2.92728 1.58382 0.377242 0.235195
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.07323 0.602165 0 0.706774 1.98823

CAGE analysis