Hb_000329_740

Information

Type transcription factor
Description TF Family: MYB
Location Contig329: 562372-563716
Sequence    

Annotation

kegg
ID rcu:RCOM_1609110
description r2r3-myb transcription factor, putative
nr
ID XP_012083678.1
description PREDICTED: myb-related protein MYBAS2 [Jatropha curcas]
swissprot
ID Q0JIC2
description Transcription factor GAMYB OS=Oryza sativa subsp. japonica GN=GAM1 PE=2 SV=1
trembl
ID B9RD28
description R2r3-myb transcription factor, putative OS=Ricinus communis GN=RCOM_1609110 PE=4 SV=1
Gene Ontology
ID GO:0003677
description myb family transcription factor family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_34583: 563330-565638
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000329_740 0.0 transcription factor TF Family: MYB PREDICTED: myb-related protein MYBAS2 [Jatropha curcas]
2 Hb_000027_140 0.1556006524 - - PREDICTED: uncharacterized protein LOC105642063 [Jatropha curcas]
3 Hb_002965_080 0.1782381568 transcription factor TF Family: C2C2-GATA PREDICTED: GATA transcription factor 15-like [Jatropha curcas]
4 Hb_001168_070 0.2027425916 - - hypothetical protein JCGZ_00277 [Jatropha curcas]
5 Hb_000086_640 0.2032846657 - - Phytosulfokine receptor precursor, putative [Ricinus communis]
6 Hb_008120_040 0.2061619426 - - PREDICTED: putative serine/threonine-protein kinase isoform X1 [Jatropha curcas]
7 Hb_004125_060 0.2082489472 - - conserved hypothetical protein [Ricinus communis]
8 Hb_004440_070 0.2105934616 - - PREDICTED: pentatricopeptide repeat-containing protein At5g66520 [Jatropha curcas]
9 Hb_006935_040 0.2123885491 - - PREDICTED: uncharacterized protein LOC105629236 [Jatropha curcas]
10 Hb_000808_110 0.2149191576 - - PREDICTED: uncharacterized protein LOC105647448 isoform X4 [Jatropha curcas]
11 Hb_000933_110 0.215869503 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 3 [Jatropha curcas]
12 Hb_004577_010 0.2168193065 - - PREDICTED: transmembrane protein 45A [Prunus mume]
13 Hb_121089_020 0.2178582526 - - PREDICTED: UDP-glucose 4-epimerase GEPI48 [Jatropha curcas]
14 Hb_001619_090 0.2183980035 - - heat shock protein binding protein, putative [Ricinus communis]
15 Hb_000836_350 0.2187286504 - - PREDICTED: uncharacterized protein LOC105642938 isoform X2 [Jatropha curcas]
16 Hb_002383_050 0.2188958442 - - PREDICTED: uncharacterized protein LOC105628744 [Jatropha curcas]
17 Hb_161901_020 0.2198881534 - - PREDICTED: serine/threonine-protein kinase AFC2 isoform X2 [Vitis vinifera]
18 Hb_000336_180 0.2206978012 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000031_100 0.2209092169 - - amine oxidase, putative [Ricinus communis]
20 Hb_001103_060 0.221052157 - - proton-dependent oligopeptide transport family protein [Populus trichocarpa]

Gene co-expression network

sample Hb_000329_740 Hb_000329_740 Hb_000027_140 Hb_000027_140 Hb_000329_740--Hb_000027_140 Hb_002965_080 Hb_002965_080 Hb_000329_740--Hb_002965_080 Hb_001168_070 Hb_001168_070 Hb_000329_740--Hb_001168_070 Hb_000086_640 Hb_000086_640 Hb_000329_740--Hb_000086_640 Hb_008120_040 Hb_008120_040 Hb_000329_740--Hb_008120_040 Hb_004125_060 Hb_004125_060 Hb_000329_740--Hb_004125_060 Hb_000027_140--Hb_002965_080 Hb_001198_130 Hb_001198_130 Hb_000027_140--Hb_001198_130 Hb_001386_020 Hb_001386_020 Hb_000027_140--Hb_001386_020 Hb_000923_100 Hb_000923_100 Hb_000027_140--Hb_000923_100 Hb_000027_140--Hb_001168_070 Hb_001519_060 Hb_001519_060 Hb_002965_080--Hb_001519_060 Hb_002249_170 Hb_002249_170 Hb_002965_080--Hb_002249_170 Hb_011671_110 Hb_011671_110 Hb_002965_080--Hb_011671_110 Hb_001396_120 Hb_001396_120 Hb_002965_080--Hb_001396_120 Hb_007224_010 Hb_007224_010 Hb_002965_080--Hb_007224_010 Hb_000336_180 Hb_000336_180 Hb_002965_080--Hb_000336_180 Hb_004361_060 Hb_004361_060 Hb_001168_070--Hb_004361_060 Hb_004577_010 Hb_004577_010 Hb_001168_070--Hb_004577_010 Hb_000445_210 Hb_000445_210 Hb_001168_070--Hb_000445_210 Hb_001168_070--Hb_002249_170 Hb_080147_020 Hb_080147_020 Hb_001168_070--Hb_080147_020 Hb_001168_070--Hb_000086_640 Hb_000035_490 Hb_000035_490 Hb_000086_640--Hb_000035_490 Hb_132840_020 Hb_132840_020 Hb_000086_640--Hb_132840_020 Hb_015807_080 Hb_015807_080 Hb_000086_640--Hb_015807_080 Hb_033930_010 Hb_033930_010 Hb_000086_640--Hb_033930_010 Hb_005941_020 Hb_005941_020 Hb_000086_640--Hb_005941_020 Hb_000753_140 Hb_000753_140 Hb_000086_640--Hb_000753_140 Hb_000673_010 Hb_000673_010 Hb_008120_040--Hb_000673_010 Hb_008120_040--Hb_015807_080 Hb_001766_070 Hb_001766_070 Hb_008120_040--Hb_001766_070 Hb_000260_160 Hb_000260_160 Hb_008120_040--Hb_000260_160 Hb_000979_140 Hb_000979_140 Hb_008120_040--Hb_000979_140 Hb_000506_110 Hb_000506_110 Hb_008120_040--Hb_000506_110 Hb_000684_100 Hb_000684_100 Hb_004125_060--Hb_000684_100 Hb_000421_230 Hb_000421_230 Hb_004125_060--Hb_000421_230 Hb_161901_020 Hb_161901_020 Hb_004125_060--Hb_161901_020 Hb_000009_220 Hb_000009_220 Hb_004125_060--Hb_000009_220 Hb_000979_060 Hb_000979_060 Hb_004125_060--Hb_000979_060 Hb_012545_030 Hb_012545_030 Hb_004125_060--Hb_012545_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.172473 0.715786 0.94131 0.412191 0.238795 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.169321 0.310703 0 0.178894 0.541271

CAGE analysis