Hb_002232_070

Information

Type -
Description -
Location Contig2232: 24705-26456
Sequence    

Annotation

kegg
ID mdm:103454042
description putative F-box/FBD/LRR-repeat protein At4g03220
nr
ID XP_008391848.1
description PREDICTED: putative F-box/FBD/LRR-repeat protein At4g03220 [Malus domestica]
swissprot
ID Q9FM89
description F-box/FBD/LRR-repeat protein At5g56420 OS=Arabidopsis thaliana GN=At5g56420 PE=2 SV=1
trembl
ID B9S7V6
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1382000 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002232_070 0.0 - - PREDICTED: putative F-box/FBD/LRR-repeat protein At4g03220 [Malus domestica]
2 Hb_045481_010 0.3027618426 - - UDP-glucuronosyltransferase, putative [Ricinus communis]
3 Hb_007527_030 0.3038858569 - - -
4 Hb_007229_010 0.3054188839 - - PREDICTED: uncharacterized protein LOC105130855 [Populus euphratica]
5 Hb_013016_010 0.3135369838 - - conserved hypothetical protein [Ricinus communis]
6 Hb_002030_120 0.3136467357 - - -
7 Hb_002837_100 0.3138664886 - - PREDICTED: F-box protein PP2-B15-like [Jatropha curcas]
8 Hb_000189_390 0.3169879362 - - PREDICTED: pollen-specific protein SF21-like isoform X1 [Jatropha curcas]
9 Hb_000668_120 0.3240222918 - - hypothetical protein JCGZ_11991 [Jatropha curcas]
10 Hb_000653_020 0.3270430937 - - PREDICTED: protein EARLY RESPONSIVE TO DEHYDRATION 15-like [Jatropha curcas]
11 Hb_028071_010 0.3273801582 - - PREDICTED: uncharacterized protein LOC105795045 [Gossypium raimondii]
12 Hb_027472_130 0.3315906411 - - Cytochrome P450 [Theobroma cacao]
13 Hb_006230_040 0.3338688038 - - kinase, putative [Ricinus communis]
14 Hb_014497_030 0.3373604599 - - PREDICTED: mitotic spindle checkpoint protein BUBR1 [Jatropha curcas]
15 Hb_076233_030 0.3377097817 - - PREDICTED: phosphoserine phosphatase, chloroplastic [Jatropha curcas]
16 Hb_011377_010 0.3385973152 - - PREDICTED: nudix hydrolase 12, mitochondrial-like [Populus euphratica]
17 Hb_000003_140 0.3389046052 - - hypothetical protein glysoja_047034, partial [Glycine soja]
18 Hb_126648_010 0.344469377 - - PREDICTED: vacuolar protein-sorting-associated protein 33 homolog [Jatropha curcas]
19 Hb_004994_130 0.3459801791 transcription factor TF Family: MYB PREDICTED: myb-like protein M [Jatropha curcas]
20 Hb_000165_110 0.3481356399 - - unknown [Medicago truncatula]

Gene co-expression network

sample Hb_002232_070 Hb_002232_070 Hb_045481_010 Hb_045481_010 Hb_002232_070--Hb_045481_010 Hb_007527_030 Hb_007527_030 Hb_002232_070--Hb_007527_030 Hb_007229_010 Hb_007229_010 Hb_002232_070--Hb_007229_010 Hb_013016_010 Hb_013016_010 Hb_002232_070--Hb_013016_010 Hb_002030_120 Hb_002030_120 Hb_002232_070--Hb_002030_120 Hb_002837_100 Hb_002837_100 Hb_002232_070--Hb_002837_100 Hb_059301_010 Hb_059301_010 Hb_045481_010--Hb_059301_010 Hb_001138_030 Hb_001138_030 Hb_045481_010--Hb_001138_030 Hb_129459_010 Hb_129459_010 Hb_045481_010--Hb_129459_010 Hb_000003_140 Hb_000003_140 Hb_045481_010--Hb_000003_140 Hb_000816_010 Hb_000816_010 Hb_045481_010--Hb_000816_010 Hb_167508_010 Hb_167508_010 Hb_045481_010--Hb_167508_010 Hb_004102_050 Hb_004102_050 Hb_007527_030--Hb_004102_050 Hb_012052_030 Hb_012052_030 Hb_007527_030--Hb_012052_030 Hb_000191_160 Hb_000191_160 Hb_007527_030--Hb_000191_160 Hb_006054_020 Hb_006054_020 Hb_007527_030--Hb_006054_020 Hb_001486_140 Hb_001486_140 Hb_007527_030--Hb_001486_140 Hb_007527_030--Hb_002837_100 Hb_001246_140 Hb_001246_140 Hb_007229_010--Hb_001246_140 Hb_006831_060 Hb_006831_060 Hb_007229_010--Hb_006831_060 Hb_007229_010--Hb_002030_120 Hb_076233_030 Hb_076233_030 Hb_007229_010--Hb_076233_030 Hb_028071_010 Hb_028071_010 Hb_007229_010--Hb_028071_010 Hb_124951_010 Hb_124951_010 Hb_013016_010--Hb_124951_010 Hb_074792_010 Hb_074792_010 Hb_013016_010--Hb_074792_010 Hb_000317_190 Hb_000317_190 Hb_013016_010--Hb_000317_190 Hb_000653_020 Hb_000653_020 Hb_013016_010--Hb_000653_020 Hb_002600_130 Hb_002600_130 Hb_013016_010--Hb_002600_130 Hb_000189_390 Hb_000189_390 Hb_013016_010--Hb_000189_390 Hb_002030_120--Hb_076233_030 Hb_014497_030 Hb_014497_030 Hb_002030_120--Hb_014497_030 Hb_002030_120--Hb_000189_390 Hb_000985_040 Hb_000985_040 Hb_002030_120--Hb_000985_040 Hb_000803_090 Hb_000803_090 Hb_002030_120--Hb_000803_090 Hb_002249_040 Hb_002249_040 Hb_002030_120--Hb_002249_040 Hb_001102_190 Hb_001102_190 Hb_002837_100--Hb_001102_190 Hb_000836_610 Hb_000836_610 Hb_002837_100--Hb_000836_610 Hb_007576_140 Hb_007576_140 Hb_002837_100--Hb_007576_140 Hb_002837_100--Hb_002030_120 Hb_000500_370 Hb_000500_370 Hb_002837_100--Hb_000500_370 Hb_011485_030 Hb_011485_030 Hb_002837_100--Hb_011485_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0130622 0.0108083 0.0690763 0 0.0122322 0.012995
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0186715 0

CAGE analysis