Hb_107281_010

Information

Type -
Description -
Location Contig107281: 232-1675
Sequence    

Annotation

kegg
ID rcu:RCOM_1114300
description protein with unknown function (EC:2.7.10.1 1.3.1.74)
nr
ID XP_002533344.1
description protein with unknown function [Ricinus communis]
swissprot
ID C0LGD7
description Probable LRR receptor-like serine/threonine-protein kinase At1g06840 OS=Arabidopsis thaliana GN=At1g06840 PE=2 SV=2
trembl
ID B9T525
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1114300 PE=4 SV=1
Gene Ontology
ID GO:0016021
description probable lrr receptor-like serine threonine-protein kinase at1g06840 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_107281_010 0.0 - - protein with unknown function [Ricinus communis]
2 Hb_001300_100 0.2390917163 - - -
3 Hb_005155_020 0.2418121241 - - -
4 Hb_000608_040 0.2483239101 - - -
5 Hb_005535_060 0.2493562787 - - -
6 Hb_027472_210 0.2597548997 - - PREDICTED: uncharacterized protein LOC105646181 [Jatropha curcas]
7 Hb_002450_140 0.2617874678 - - (S)-N-methylcoclaurine 3'-hydroxylase isozyme, putative [Ricinus communis]
8 Hb_000169_190 0.2641929956 desease resistance Gene Name: AAA_17 PREDICTED: protein SMG9-like [Jatropha curcas]
9 Hb_063805_010 0.2734871501 - - -
10 Hb_002805_170 0.2774669654 - - exosome complex exonuclease rrp45, putative [Ricinus communis]
11 Hb_001246_140 0.2795244295 - - -
12 Hb_018118_040 0.2802485282 - - -
13 Hb_001414_140 0.2837681424 - - PREDICTED: probable S-adenosylmethionine-dependent methyltransferase At5g38100 [Populus euphratica]
14 Hb_000627_100 0.2843175744 - - -
15 Hb_000538_010 0.2852814792 transcription factor TF Family: MYB-related PREDICTED: protein REVEILLE 1 isoform X2 [Jatropha curcas]
16 Hb_012184_050 0.2860318392 - - hypothetical protein POPTR_0008s01610g [Populus trichocarpa]
17 Hb_058551_010 0.2875309377 - - PREDICTED: choline monooxygenase, chloroplastic isoform X2 [Jatropha curcas]
18 Hb_000390_220 0.2875462389 - - PREDICTED: uncharacterized protein LOC100244219 [Vitis vinifera]
19 Hb_000099_090 0.2877237618 - - Na(+)/H(+) antiporter, putative [Ricinus communis]
20 Hb_087086_020 0.2879450698 - - hypothetical protein JCGZ_02762 [Jatropha curcas]

Gene co-expression network

sample Hb_107281_010 Hb_107281_010 Hb_001300_100 Hb_001300_100 Hb_107281_010--Hb_001300_100 Hb_005155_020 Hb_005155_020 Hb_107281_010--Hb_005155_020 Hb_000608_040 Hb_000608_040 Hb_107281_010--Hb_000608_040 Hb_005535_060 Hb_005535_060 Hb_107281_010--Hb_005535_060 Hb_027472_210 Hb_027472_210 Hb_107281_010--Hb_027472_210 Hb_002450_140 Hb_002450_140 Hb_107281_010--Hb_002450_140 Hb_063805_010 Hb_063805_010 Hb_001300_100--Hb_063805_010 Hb_058551_010 Hb_058551_010 Hb_001300_100--Hb_058551_010 Hb_001300_100--Hb_027472_210 Hb_002890_150 Hb_002890_150 Hb_001300_100--Hb_002890_150 Hb_013405_150 Hb_013405_150 Hb_001300_100--Hb_013405_150 Hb_002947_040 Hb_002947_040 Hb_001300_100--Hb_002947_040 Hb_000169_190 Hb_000169_190 Hb_005155_020--Hb_000169_190 Hb_036693_010 Hb_036693_010 Hb_005155_020--Hb_036693_010 Hb_005517_010 Hb_005517_010 Hb_005155_020--Hb_005517_010 Hb_000099_090 Hb_000099_090 Hb_005155_020--Hb_000099_090 Hb_004570_050 Hb_004570_050 Hb_005155_020--Hb_004570_050 Hb_012184_050 Hb_012184_050 Hb_005155_020--Hb_012184_050 Hb_000608_040--Hb_005535_060 Hb_001703_130 Hb_001703_130 Hb_000608_040--Hb_001703_130 Hb_000608_040--Hb_012184_050 Hb_000580_130 Hb_000580_130 Hb_000608_040--Hb_000580_130 Hb_002805_170 Hb_002805_170 Hb_000608_040--Hb_002805_170 Hb_001922_130 Hb_001922_130 Hb_000608_040--Hb_001922_130 Hb_005535_060--Hb_001703_130 Hb_005535_060--Hb_002805_170 Hb_005535_060--Hb_012184_050 Hb_001473_190 Hb_001473_190 Hb_005535_060--Hb_001473_190 Hb_063409_020 Hb_063409_020 Hb_005535_060--Hb_063409_020 Hb_027472_210--Hb_063805_010 Hb_092337_020 Hb_092337_020 Hb_027472_210--Hb_092337_020 Hb_000563_330 Hb_000563_330 Hb_027472_210--Hb_000563_330 Hb_007083_010 Hb_007083_010 Hb_027472_210--Hb_007083_010 Hb_027472_210--Hb_000169_190 Hb_005291_040 Hb_005291_040 Hb_027472_210--Hb_005291_040 Hb_003026_030 Hb_003026_030 Hb_002450_140--Hb_003026_030 Hb_001269_510 Hb_001269_510 Hb_002450_140--Hb_001269_510 Hb_000997_150 Hb_000997_150 Hb_002450_140--Hb_000997_150 Hb_044155_010 Hb_044155_010 Hb_002450_140--Hb_044155_010 Hb_023001_070 Hb_023001_070 Hb_002450_140--Hb_023001_070 Hb_002450_140--Hb_001300_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.288817 0.647874 0.692081 0 0.735191 0.24527
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.127908 0.200984 0 0.0416654 0

CAGE analysis