Hb_002400_170

Information

Type -
Description -
Location Contig2400: 153236-155753
Sequence    

Annotation

kegg
ID mdm:103441475
description adenine phosphoribosyltransferase 2-like
nr
ID XP_012076532.1
description PREDICTED: adenine phosphoribosyltransferase 5 [Jatropha curcas]
swissprot
ID Q9LFP0
description Adenine phosphoribosyltransferase 5 OS=Arabidopsis thaliana GN=APT5 PE=1 SV=1
trembl
ID B9IKY6
description Adenine phosphoribosyltransferase 2 family protein OS=Populus trichocarpa GN=POPTR_0018s01860g PE=3 SV=1
Gene Ontology
ID GO:0005737
description adenine phosphoribosyltransferase 5

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_25160: 153046-153284 , PASA_asmbl_25161: 153442-153689 , PASA_asmbl_25163: 155044-155661
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002400_170 0.0 - - PREDICTED: adenine phosphoribosyltransferase 5 [Jatropha curcas]
2 Hb_006788_090 0.1794662203 - - -
3 Hb_004846_230 0.1836106479 - - Chaperone protein dnaJ 8, chloroplast precursor, putative [Ricinus communis]
4 Hb_002794_040 0.1954128366 - - PREDICTED: C-type lectin receptor-like tyrosine-protein kinase At1g52310 [Jatropha curcas]
5 Hb_010318_010 0.1983367321 - - PREDICTED: lactation elevated protein 1 isoform X1 [Jatropha curcas]
6 Hb_003549_130 0.1983867071 - - neutral/alkaline invertase [Manihot esculenta]
7 Hb_000392_240 0.200976595 - - DNA binding protein, putative [Ricinus communis]
8 Hb_007123_080 0.2040298425 - - big map kinase/bmk, putative [Ricinus communis]
9 Hb_140360_010 0.2067292363 - - PREDICTED: 50S ribosomal protein L11, chloroplastic-like [Populus euphratica]
10 Hb_168440_010 0.212042553 - - PREDICTED: peroxidase 9 [Jatropha curcas]
11 Hb_002218_100 0.2127056861 - - PREDICTED: uncharacterized protein At2g34160 [Jatropha curcas]
12 Hb_000069_240 0.2148683354 - - PREDICTED: protein DEFECTIVE IN MERISTEM SILENCING 3-like [Jatropha curcas]
13 Hb_000500_370 0.2151974033 - - trehalose-6-phosphate synthase, putative [Ricinus communis]
14 Hb_000347_140 0.2168558753 - - PREDICTED: protein FLUORESCENT IN BLUE LIGHT, chloroplastic isoform X2 [Jatropha curcas]
15 Hb_008173_060 0.2213628213 - - PREDICTED: multiple C2 and transmembrane domain-containing protein 2 [Jatropha curcas]
16 Hb_001396_040 0.2224193024 - - PREDICTED: uncharacterized protein LOC105644845 [Jatropha curcas]
17 Hb_001022_020 0.222998559 transcription factor TF Family: NAC NAC transcription factor 038 [Jatropha curcas]
18 Hb_000312_070 0.2233022301 - - conserved hypothetical protein [Ricinus communis]
19 Hb_002435_090 0.2256979871 - - PREDICTED: membrane-associated 30 kDa protein, chloroplastic [Jatropha curcas]
20 Hb_001019_070 0.2276355813 - - hypothetical protein POPTR_0007s05770g [Populus trichocarpa]

Gene co-expression network

sample Hb_002400_170 Hb_002400_170 Hb_006788_090 Hb_006788_090 Hb_002400_170--Hb_006788_090 Hb_004846_230 Hb_004846_230 Hb_002400_170--Hb_004846_230 Hb_002794_040 Hb_002794_040 Hb_002400_170--Hb_002794_040 Hb_010318_010 Hb_010318_010 Hb_002400_170--Hb_010318_010 Hb_003549_130 Hb_003549_130 Hb_002400_170--Hb_003549_130 Hb_000392_240 Hb_000392_240 Hb_002400_170--Hb_000392_240 Hb_006788_090--Hb_004846_230 Hb_001396_040 Hb_001396_040 Hb_006788_090--Hb_001396_040 Hb_000500_330 Hb_000500_330 Hb_006788_090--Hb_000500_330 Hb_002942_120 Hb_002942_120 Hb_006788_090--Hb_002942_120 Hb_000483_270 Hb_000483_270 Hb_006788_090--Hb_000483_270 Hb_006788_090--Hb_000392_240 Hb_004846_230--Hb_002942_120 Hb_004846_230--Hb_001396_040 Hb_004846_230--Hb_000500_330 Hb_004846_230--Hb_002794_040 Hb_004218_050 Hb_004218_050 Hb_004846_230--Hb_004218_050 Hb_002435_090 Hb_002435_090 Hb_002794_040--Hb_002435_090 Hb_002794_040--Hb_000392_240 Hb_188739_010 Hb_188739_010 Hb_002794_040--Hb_188739_010 Hb_001343_120 Hb_001343_120 Hb_002794_040--Hb_001343_120 Hb_000046_520 Hb_000046_520 Hb_002794_040--Hb_000046_520 Hb_000312_070 Hb_000312_070 Hb_010318_010--Hb_000312_070 Hb_000392_450 Hb_000392_450 Hb_010318_010--Hb_000392_450 Hb_000123_140 Hb_000123_140 Hb_010318_010--Hb_000123_140 Hb_005194_040 Hb_005194_040 Hb_010318_010--Hb_005194_040 Hb_009771_060 Hb_009771_060 Hb_010318_010--Hb_009771_060 Hb_000345_290 Hb_000345_290 Hb_010318_010--Hb_000345_290 Hb_003106_200 Hb_003106_200 Hb_003549_130--Hb_003106_200 Hb_001198_080 Hb_001198_080 Hb_003549_130--Hb_001198_080 Hb_015026_020 Hb_015026_020 Hb_003549_130--Hb_015026_020 Hb_003430_040 Hb_003430_040 Hb_003549_130--Hb_003430_040 Hb_000032_200 Hb_000032_200 Hb_003549_130--Hb_000032_200 Hb_000818_120 Hb_000818_120 Hb_003549_130--Hb_000818_120 Hb_005527_060 Hb_005527_060 Hb_000392_240--Hb_005527_060 Hb_000446_040 Hb_000446_040 Hb_000392_240--Hb_000446_040 Hb_000392_240--Hb_002942_120 Hb_000392_240--Hb_003106_200 Hb_000011_560 Hb_000011_560 Hb_000392_240--Hb_000011_560
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.142252 1.35092 6.13456 0.356718 0.139073 0.100585
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.523397 1.0289 0.186511 0.582576 1.03507

CAGE analysis