Hb_010318_010

Information

Type -
Description -
Location Contig10318: 13076-15030
Sequence    

Annotation

kegg
ID rcu:RCOM_0048410
description atpase n2b, putative
nr
ID XP_012071591.1
description PREDICTED: lactation elevated protein 1 isoform X1 [Jatropha curcas]
swissprot
ID Q8WV93
description Lactation elevated protein 1 OS=Homo sapiens GN=LACE1 PE=1 SV=2
trembl
ID A0A067L2P2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04098 PE=4 SV=1
Gene Ontology
ID GO:0005524
description lactation elevated protein 1 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_010318_010 0.0 - - PREDICTED: lactation elevated protein 1 isoform X1 [Jatropha curcas]
2 Hb_000312_070 0.156350505 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000392_450 0.1772597674 - - PREDICTED: isochorismate synthase 2, chloroplastic [Jatropha curcas]
4 Hb_000123_140 0.187356451 - - PREDICTED: 21 kDa protein-like [Populus euphratica]
5 Hb_005194_040 0.1876125793 transcription factor TF Family: LOB LOB domain-containing protein, putative [Ricinus communis]
6 Hb_009771_060 0.1877208528 - - PREDICTED: 30S ribosomal protein S31, chloroplastic [Populus euphratica]
7 Hb_000345_290 0.1878821856 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
8 Hb_007263_010 0.1884934071 - - PREDICTED: clustered mitochondria protein homolog [Jatropha curcas]
9 Hb_004517_030 0.1945273346 - - conserved hypothetical protein [Ricinus communis]
10 Hb_002400_170 0.1983367321 - - PREDICTED: adenine phosphoribosyltransferase 5 [Jatropha curcas]
11 Hb_029622_030 0.1984863785 - - ankyrin repeat-containing protein, putative [Ricinus communis]
12 Hb_140360_010 0.2037950162 - - PREDICTED: 50S ribosomal protein L11, chloroplastic-like [Populus euphratica]
13 Hb_001301_330 0.2043531563 - - OTU-like cysteine protease family protein [Populus trichocarpa]
14 Hb_000574_470 0.2070514928 - - PREDICTED: chaperone protein dnaJ 1, mitochondrial isoform X1 [Jatropha curcas]
15 Hb_007123_080 0.2074482744 - - big map kinase/bmk, putative [Ricinus communis]
16 Hb_000211_040 0.2075028472 - - PREDICTED: uncharacterized protein LOC105629236 [Jatropha curcas]
17 Hb_000640_050 0.2077000735 - - DNA replication licensing factor MCM7, putative [Ricinus communis]
18 Hb_006935_040 0.2077124975 - - PREDICTED: uncharacterized protein LOC105629236 [Jatropha curcas]
19 Hb_002794_040 0.2097296017 - - PREDICTED: C-type lectin receptor-like tyrosine-protein kinase At1g52310 [Jatropha curcas]
20 Hb_003835_110 0.2103257629 - - PREDICTED: nucleobase-ascorbate transporter 11 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_010318_010 Hb_010318_010 Hb_000312_070 Hb_000312_070 Hb_010318_010--Hb_000312_070 Hb_000392_450 Hb_000392_450 Hb_010318_010--Hb_000392_450 Hb_000123_140 Hb_000123_140 Hb_010318_010--Hb_000123_140 Hb_005194_040 Hb_005194_040 Hb_010318_010--Hb_005194_040 Hb_009771_060 Hb_009771_060 Hb_010318_010--Hb_009771_060 Hb_000345_290 Hb_000345_290 Hb_010318_010--Hb_000345_290 Hb_000152_180 Hb_000152_180 Hb_000312_070--Hb_000152_180 Hb_017193_010 Hb_017193_010 Hb_000312_070--Hb_017193_010 Hb_000312_070--Hb_009771_060 Hb_000312_070--Hb_000392_450 Hb_001102_050 Hb_001102_050 Hb_000312_070--Hb_001102_050 Hb_007263_010 Hb_007263_010 Hb_000312_070--Hb_007263_010 Hb_004517_030 Hb_004517_030 Hb_000392_450--Hb_004517_030 Hb_000392_450--Hb_007263_010 Hb_002027_320 Hb_002027_320 Hb_000392_450--Hb_002027_320 Hb_003874_010 Hb_003874_010 Hb_000392_450--Hb_003874_010 Hb_007217_010 Hb_007217_010 Hb_000392_450--Hb_007217_010 Hb_000212_250 Hb_000212_250 Hb_000392_450--Hb_000212_250 Hb_000211_040 Hb_000211_040 Hb_000123_140--Hb_000211_040 Hb_000959_190 Hb_000959_190 Hb_000123_140--Hb_000959_190 Hb_001322_020 Hb_001322_020 Hb_000123_140--Hb_001322_020 Hb_155025_010 Hb_155025_010 Hb_000123_140--Hb_155025_010 Hb_000120_350 Hb_000120_350 Hb_000123_140--Hb_000120_350 Hb_006935_040 Hb_006935_040 Hb_000123_140--Hb_006935_040 Hb_000424_070 Hb_000424_070 Hb_005194_040--Hb_000424_070 Hb_029622_030 Hb_029622_030 Hb_005194_040--Hb_029622_030 Hb_005194_040--Hb_006935_040 Hb_000313_290 Hb_000313_290 Hb_005194_040--Hb_000313_290 Hb_006846_160 Hb_006846_160 Hb_005194_040--Hb_006846_160 Hb_000300_710 Hb_000300_710 Hb_005194_040--Hb_000300_710 Hb_003077_150 Hb_003077_150 Hb_009771_060--Hb_003077_150 Hb_009771_060--Hb_007263_010 Hb_002194_050 Hb_002194_050 Hb_009771_060--Hb_002194_050 Hb_005332_080 Hb_005332_080 Hb_009771_060--Hb_005332_080 Hb_007451_040 Hb_007451_040 Hb_009771_060--Hb_007451_040 Hb_009771_060--Hb_000152_180 Hb_001369_030 Hb_001369_030 Hb_000345_290--Hb_001369_030 Hb_000062_360 Hb_000062_360 Hb_000345_290--Hb_000062_360 Hb_000212_300 Hb_000212_300 Hb_000345_290--Hb_000212_300 Hb_000345_290--Hb_001322_020 Hb_006555_040 Hb_006555_040 Hb_000345_290--Hb_006555_040 Hb_000345_290--Hb_029622_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.1543 4.9896 26.7026 3.64632 5.41434 0.594514
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.16402 4.13951 0.566551 3.39831 6.26766

CAGE analysis