Hb_153258_060

Information

Type -
Description -
Location Contig153258: 41356-43638
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_153258_060 0.0 - - -
2 Hb_015183_040 0.3125476207 - - -
3 Hb_006831_060 0.3141579732 - - hypothetical protein JCGZ_16419 [Jatropha curcas]
4 Hb_034243_030 0.3266124 - - B3 domain-containing protein [Medicago truncatula]
5 Hb_003992_010 0.3289501133 - - -
6 Hb_000139_160 0.333875979 - - conserved hypothetical protein [Ricinus communis]
7 Hb_000025_380 0.3480140978 - - hypothetical protein JCGZ_22787 [Jatropha curcas]
8 Hb_000866_360 0.3523913511 - - -
9 Hb_044662_050 0.3555495477 - - hypothetical protein POPTR_0002s08440g [Populus trichocarpa]
10 Hb_023226_050 0.3589566186 transcription factor TF Family: BES1 BRASSINAZOLE-RESISTANT 1 protein, putative [Ricinus communis]
11 Hb_005725_200 0.3599396673 transcription factor TF Family: GRF hypothetical protein JCGZ_15989 [Jatropha curcas]
12 Hb_007229_010 0.3650972312 - - PREDICTED: uncharacterized protein LOC105130855 [Populus euphratica]
13 Hb_002450_160 0.3655087348 - - PREDICTED: protein 108 [Jatropha curcas]
14 Hb_000321_080 0.3693701204 - - histone H4 [Zea mays]
15 Hb_011316_070 0.3697731528 - - acyltransferase, putative [Ricinus communis]
16 Hb_000111_410 0.3731818363 - - conserved hypothetical protein [Ricinus communis]
17 Hb_104812_020 0.3751863813 transcription factor TF Family: LOB LOB domain-containing protein, putative [Ricinus communis]
18 Hb_001049_080 0.3809889547 - - -
19 Hb_002259_200 0.3822108501 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000653_020 0.3847669501 - - PREDICTED: protein EARLY RESPONSIVE TO DEHYDRATION 15-like [Jatropha curcas]

Gene co-expression network

sample Hb_153258_060 Hb_153258_060 Hb_015183_040 Hb_015183_040 Hb_153258_060--Hb_015183_040 Hb_006831_060 Hb_006831_060 Hb_153258_060--Hb_006831_060 Hb_034243_030 Hb_034243_030 Hb_153258_060--Hb_034243_030 Hb_003992_010 Hb_003992_010 Hb_153258_060--Hb_003992_010 Hb_000139_160 Hb_000139_160 Hb_153258_060--Hb_000139_160 Hb_000025_380 Hb_000025_380 Hb_153258_060--Hb_000025_380 Hb_015183_040--Hb_034243_030 Hb_015183_040--Hb_003992_010 Hb_001999_270 Hb_001999_270 Hb_015183_040--Hb_001999_270 Hb_002461_050 Hb_002461_050 Hb_015183_040--Hb_002461_050 Hb_004491_020 Hb_004491_020 Hb_015183_040--Hb_004491_020 Hb_000264_150 Hb_000264_150 Hb_015183_040--Hb_000264_150 Hb_007229_010 Hb_007229_010 Hb_006831_060--Hb_007229_010 Hb_006831_060--Hb_000025_380 Hb_006831_060--Hb_001999_270 Hb_006831_060--Hb_015183_040 Hb_005489_030 Hb_005489_030 Hb_006831_060--Hb_005489_030 Hb_034243_030--Hb_003992_010 Hb_034243_030--Hb_002461_050 Hb_000345_470 Hb_000345_470 Hb_034243_030--Hb_000345_470 Hb_034243_030--Hb_001999_270 Hb_126508_010 Hb_126508_010 Hb_034243_030--Hb_126508_010 Hb_003992_010--Hb_002461_050 Hb_003992_010--Hb_126508_010 Hb_003992_010--Hb_000345_470 Hb_105061_010 Hb_105061_010 Hb_003992_010--Hb_105061_010 Hb_000009_370 Hb_000009_370 Hb_000139_160--Hb_000009_370 Hb_028621_030 Hb_028621_030 Hb_000139_160--Hb_028621_030 Hb_007213_020 Hb_007213_020 Hb_000139_160--Hb_007213_020 Hb_007853_020 Hb_007853_020 Hb_000139_160--Hb_007853_020 Hb_022680_020 Hb_022680_020 Hb_000139_160--Hb_022680_020 Hb_000522_070 Hb_000522_070 Hb_000139_160--Hb_000522_070 Hb_044662_050 Hb_044662_050 Hb_000025_380--Hb_044662_050 Hb_027472_110 Hb_027472_110 Hb_000025_380--Hb_027472_110 Hb_004586_310 Hb_004586_310 Hb_000025_380--Hb_004586_310 Hb_002400_170 Hb_002400_170 Hb_000025_380--Hb_002400_170 Hb_002693_040 Hb_002693_040 Hb_000025_380--Hb_002693_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0494103 0 0.231091 0 0.0247936 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0566761 0 0 0.0179657 0

CAGE analysis