Hb_007213_020

Information

Type transcription factor
Description TF Family: B3
Location Contig7213: 29291-30736
Sequence    

Annotation

kegg
ID rcu:RCOM_0813720
description DNA binding protein, putative
nr
ID XP_012066890.1
description PREDICTED: B3 domain-containing protein At3g19184 isoform X1 [Jatropha curcas]
swissprot
ID Q1G3M3
description B3 domain-containing protein At3g19184 OS=Arabidopsis thaliana GN=At3g19184 PE=2 SV=1
trembl
ID B9RYJ7
description DNA binding protein, putative OS=Ricinus communis GN=RCOM_0813720 PE=4 SV=1
Gene Ontology
ID GO:0005634
description b3 domain-containing protein at3g19184-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007213_020 0.0 transcription factor TF Family: B3 PREDICTED: B3 domain-containing protein At3g19184 isoform X1 [Jatropha curcas]
2 Hb_005116_030 0.2132378936 - - PREDICTED: uncharacterized protein LOC105650003 isoform X2 [Jatropha curcas]
3 Hb_002387_140 0.218766105 - - PREDICTED: serine/threonine-protein kinase At5g01020-like [Jatropha curcas]
4 Hb_027445_070 0.2228569607 - - PREDICTED: denticleless protein homolog [Jatropha curcas]
5 Hb_036182_010 0.2230693234 - - hypothetical protein POPTR_0473s00220g [Populus trichocarpa]
6 Hb_010369_020 0.2267421729 - - hypothetical protein JCGZ_21088 [Jatropha curcas]
7 Hb_000621_100 0.2297046536 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000163_020 0.2316677999 - - -
9 Hb_000422_040 0.2335222991 - - hypothetical protein CICLE_v10013147mg [Citrus clementina]
10 Hb_061361_010 0.2339340385 - - kinase, putative [Ricinus communis]
11 Hb_000025_770 0.2345595935 - - PREDICTED: sugar transport protein 14-like [Jatropha curcas]
12 Hb_006152_040 0.2368706062 transcription factor TF Family: GNAT PREDICTED: uncharacterized protein LOC105645062 isoform X2 [Jatropha curcas]
13 Hb_001205_280 0.2405924016 - - PREDICTED: probable polyol transporter 6 [Jatropha curcas]
14 Hb_023386_070 0.2438560024 - - PREDICTED: probable pectinesterase 68 [Jatropha curcas]
15 Hb_005306_060 0.2446068797 - - PREDICTED: EPIDERMAL PATTERNING FACTOR-like protein 5 [Jatropha curcas]
16 Hb_006120_140 0.2457181824 - - PREDICTED: gibberellin 2-beta-dioxygenase 2 [Jatropha curcas]
17 Hb_074674_010 0.2464977165 - - Cell division cycle protein cdt2, putative [Ricinus communis]
18 Hb_005066_050 0.2472334139 - - -
19 Hb_003010_050 0.2491427414 - - -
20 Hb_001384_030 0.2511128262 - - PREDICTED: uncharacterized protein LOC105049010 [Elaeis guineensis]

Gene co-expression network

sample Hb_007213_020 Hb_007213_020 Hb_005116_030 Hb_005116_030 Hb_007213_020--Hb_005116_030 Hb_002387_140 Hb_002387_140 Hb_007213_020--Hb_002387_140 Hb_027445_070 Hb_027445_070 Hb_007213_020--Hb_027445_070 Hb_036182_010 Hb_036182_010 Hb_007213_020--Hb_036182_010 Hb_010369_020 Hb_010369_020 Hb_007213_020--Hb_010369_020 Hb_000621_100 Hb_000621_100 Hb_007213_020--Hb_000621_100 Hb_025163_020 Hb_025163_020 Hb_005116_030--Hb_025163_020 Hb_008215_020 Hb_008215_020 Hb_005116_030--Hb_008215_020 Hb_000069_650 Hb_000069_650 Hb_005116_030--Hb_000069_650 Hb_020301_020 Hb_020301_020 Hb_005116_030--Hb_020301_020 Hb_072201_010 Hb_072201_010 Hb_005116_030--Hb_072201_010 Hb_001950_090 Hb_001950_090 Hb_005116_030--Hb_001950_090 Hb_000540_210 Hb_000540_210 Hb_002387_140--Hb_000540_210 Hb_002387_140--Hb_005116_030 Hb_008453_040 Hb_008453_040 Hb_002387_140--Hb_008453_040 Hb_002078_230 Hb_002078_230 Hb_002387_140--Hb_002078_230 Hb_000003_060 Hb_000003_060 Hb_002387_140--Hb_000003_060 Hb_000179_260 Hb_000179_260 Hb_027445_070--Hb_000179_260 Hb_001688_100 Hb_001688_100 Hb_027445_070--Hb_001688_100 Hb_027445_070--Hb_005116_030 Hb_001584_360 Hb_001584_360 Hb_027445_070--Hb_001584_360 Hb_003813_110 Hb_003813_110 Hb_027445_070--Hb_003813_110 Hb_001322_160 Hb_001322_160 Hb_027445_070--Hb_001322_160 Hb_001769_150 Hb_001769_150 Hb_036182_010--Hb_001769_150 Hb_036182_010--Hb_000621_100 Hb_006120_140 Hb_006120_140 Hb_036182_010--Hb_006120_140 Hb_000358_010 Hb_000358_010 Hb_036182_010--Hb_000358_010 Hb_006316_090 Hb_006316_090 Hb_036182_010--Hb_006316_090 Hb_001076_010 Hb_001076_010 Hb_036182_010--Hb_001076_010 Hb_000163_020 Hb_000163_020 Hb_010369_020--Hb_000163_020 Hb_005306_060 Hb_005306_060 Hb_010369_020--Hb_005306_060 Hb_074674_010 Hb_074674_010 Hb_010369_020--Hb_074674_010 Hb_001384_030 Hb_001384_030 Hb_010369_020--Hb_001384_030 Hb_061361_010 Hb_061361_010 Hb_010369_020--Hb_061361_010 Hb_023386_070 Hb_023386_070 Hb_010369_020--Hb_023386_070 Hb_000621_100--Hb_006120_140 Hb_000000_040 Hb_000000_040 Hb_000621_100--Hb_000000_040 Hb_000025_770 Hb_000025_770 Hb_000621_100--Hb_000025_770 Hb_000321_040 Hb_000321_040 Hb_000621_100--Hb_000321_040 Hb_000621_100--Hb_061361_010 Hb_005066_050 Hb_005066_050 Hb_000621_100--Hb_005066_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.52649 0.227325 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.090837 0 0 0.116656 0

CAGE analysis