Hb_027445_070

Information

Type -
Description -
Location Contig27445: 65503-70635
Sequence    

Annotation

kegg
ID rcu:RCOM_1064120
description Cell division cycle protein cdt2, putative
nr
ID XP_012072343.1
description PREDICTED: denticleless protein homolog [Jatropha curcas]
swissprot
ID Q5ZJW8
description Denticleless protein homolog OS=Gallus gallus GN=DTL PE=2 SV=1
trembl
ID A0A067LPH4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_10264 PE=4 SV=1
Gene Ontology
ID GO:0080008
description denticleless protein homolog

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_28740: 65923-69017 , PASA_asmbl_28741: 69377-69670
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_027445_070 0.0 - - PREDICTED: denticleless protein homolog [Jatropha curcas]
2 Hb_000179_260 0.1679738781 - - PREDICTED: UBP1-associated proteins 1C isoform X1 [Jatropha curcas]
3 Hb_001688_100 0.1874231312 - - PREDICTED: kinesin-like protein NACK1 [Jatropha curcas]
4 Hb_005116_030 0.1893265395 - - PREDICTED: uncharacterized protein LOC105650003 isoform X2 [Jatropha curcas]
5 Hb_001584_360 0.1924669559 - - PREDICTED: serine/threonine-protein kinase haspin homolog hrk1 [Jatropha curcas]
6 Hb_003813_110 0.1925917235 - - conserved hypothetical protein [Ricinus communis]
7 Hb_001322_160 0.1941041 - - hypothetical protein JCGZ_03472 [Jatropha curcas]
8 Hb_001328_070 0.1949181704 - - PREDICTED: glucan endo-1,3-beta-glucosidase 13 [Jatropha curcas]
9 Hb_000661_150 0.1976235458 - - ubiquitin-conjugating enzyme E2 C, putative [Ricinus communis]
10 Hb_023386_070 0.2010658364 - - PREDICTED: probable pectinesterase 68 [Jatropha curcas]
11 Hb_020301_020 0.2028812676 - - calmodulin binding protein, putative [Ricinus communis]
12 Hb_010369_020 0.2031570029 - - hypothetical protein JCGZ_21088 [Jatropha curcas]
13 Hb_001205_280 0.2037556331 - - PREDICTED: probable polyol transporter 6 [Jatropha curcas]
14 Hb_000163_020 0.2060824897 - - -
15 Hb_007943_170 0.2115121185 - - PREDICTED: rho guanine nucleotide exchange factor 8-like [Jatropha curcas]
16 Hb_000176_040 0.2116265206 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase ASHR3 isoform X2 [Jatropha curcas]
17 Hb_000422_040 0.2120138837 - - hypothetical protein CICLE_v10013147mg [Citrus clementina]
18 Hb_074674_010 0.2147898104 - - Cell division cycle protein cdt2, putative [Ricinus communis]
19 Hb_001699_270 0.2156742385 - - PREDICTED: uncharacterized protein LOC105628996 [Jatropha curcas]
20 Hb_061361_010 0.21706284 - - kinase, putative [Ricinus communis]

Gene co-expression network

sample Hb_027445_070 Hb_027445_070 Hb_000179_260 Hb_000179_260 Hb_027445_070--Hb_000179_260 Hb_001688_100 Hb_001688_100 Hb_027445_070--Hb_001688_100 Hb_005116_030 Hb_005116_030 Hb_027445_070--Hb_005116_030 Hb_001584_360 Hb_001584_360 Hb_027445_070--Hb_001584_360 Hb_003813_110 Hb_003813_110 Hb_027445_070--Hb_003813_110 Hb_001322_160 Hb_001322_160 Hb_027445_070--Hb_001322_160 Hb_000179_260--Hb_001688_100 Hb_023386_070 Hb_023386_070 Hb_000179_260--Hb_023386_070 Hb_001205_280 Hb_001205_280 Hb_000179_260--Hb_001205_280 Hb_001565_090 Hb_001565_090 Hb_000179_260--Hb_001565_090 Hb_000661_150 Hb_000661_150 Hb_000179_260--Hb_000661_150 Hb_001688_100--Hb_000661_150 Hb_101133_050 Hb_101133_050 Hb_001688_100--Hb_101133_050 Hb_080952_060 Hb_080952_060 Hb_001688_100--Hb_080952_060 Hb_001307_150 Hb_001307_150 Hb_001688_100--Hb_001307_150 Hb_001699_270 Hb_001699_270 Hb_001688_100--Hb_001699_270 Hb_005276_090 Hb_005276_090 Hb_001688_100--Hb_005276_090 Hb_025163_020 Hb_025163_020 Hb_005116_030--Hb_025163_020 Hb_008215_020 Hb_008215_020 Hb_005116_030--Hb_008215_020 Hb_000069_650 Hb_000069_650 Hb_005116_030--Hb_000069_650 Hb_020301_020 Hb_020301_020 Hb_005116_030--Hb_020301_020 Hb_072201_010 Hb_072201_010 Hb_005116_030--Hb_072201_010 Hb_001950_090 Hb_001950_090 Hb_005116_030--Hb_001950_090 Hb_000334_120 Hb_000334_120 Hb_001584_360--Hb_000334_120 Hb_001584_360--Hb_001688_100 Hb_033041_010 Hb_033041_010 Hb_001584_360--Hb_033041_010 Hb_005183_150 Hb_005183_150 Hb_001584_360--Hb_005183_150 Hb_007632_080 Hb_007632_080 Hb_001584_360--Hb_007632_080 Hb_001584_360--Hb_101133_050 Hb_000567_290 Hb_000567_290 Hb_003813_110--Hb_000567_290 Hb_003813_110--Hb_000661_150 Hb_004619_090 Hb_004619_090 Hb_003813_110--Hb_004619_090 Hb_000441_210 Hb_000441_210 Hb_003813_110--Hb_000441_210 Hb_002311_090 Hb_002311_090 Hb_003813_110--Hb_002311_090 Hb_000418_040 Hb_000418_040 Hb_003813_110--Hb_000418_040 Hb_001322_160--Hb_020301_020 Hb_001322_160--Hb_000661_150 Hb_000003_060 Hb_000003_060 Hb_001322_160--Hb_000003_060 Hb_002284_260 Hb_002284_260 Hb_001322_160--Hb_002284_260 Hb_007632_210 Hb_007632_210 Hb_001322_160--Hb_007632_210 Hb_001322_160--Hb_005183_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0701423 0 1.60947 0.860926 0 0.014106
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.06393 0 0.0944199 0.321302 0

CAGE analysis