Hb_001322_160

Information

Type -
Description -
Location Contig1322: 130712-136621
Sequence    

Annotation

kegg
ID rcu:RCOM_0192870
description cell division control protein, putative (EC:2.7.11.23)
nr
ID KDP39941.1
description hypothetical protein JCGZ_03472 [Jatropha curcas]
swissprot
ID Q8SR85
description Probable cell division control protein 7 homolog 1 OS=Encephalitozoon cuniculi (strain GB-M1) GN=CDC7-1 PE=3 SV=1
trembl
ID A0A067KUQ1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_03472 PE=4 SV=1
Gene Ontology
ID GO:0004672
description probable serine threonine-protein kinase cdc7

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_09275: 130911-131100 , PASA_asmbl_09277: 132299-133156 , PASA_asmbl_09278: 133455-134351 , PASA_asmbl_09279: 134530-136585
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001322_160 0.0 - - hypothetical protein JCGZ_03472 [Jatropha curcas]
2 Hb_020301_020 0.1232206058 - - calmodulin binding protein, putative [Ricinus communis]
3 Hb_000661_150 0.1368630251 - - ubiquitin-conjugating enzyme E2 C, putative [Ricinus communis]
4 Hb_000003_060 0.1401883039 transcription factor TF Family: HMG DNA-binding protein MNB1B, putative [Ricinus communis]
5 Hb_002284_260 0.1418382533 - - brca1 interacting protein helicase 1 brip1, putative [Ricinus communis]
6 Hb_007632_210 0.1456835674 - - PREDICTED: sodium/potassium/calcium exchanger 1 [Populus euphratica]
7 Hb_005183_150 0.1469264523 - - PREDICTED: protein CYPRO4 [Jatropha curcas]
8 Hb_000960_090 0.1519247771 - - conserved hypothetical protein [Ricinus communis]
9 Hb_002030_130 0.1534118619 - - hypothetical protein CARUB_v10021660mg, partial [Capsella rubella]
10 Hb_000046_240 0.1548758021 - - PREDICTED: uncharacterized protein LOC105631837 [Jatropha curcas]
11 Hb_093458_020 0.155403882 desease resistance Gene Name: AAA PREDICTED: chromosome transmission fidelity protein 18 homolog [Jatropha curcas]
12 Hb_001780_030 0.1563577766 - - PREDICTED: probable serine/threonine-protein kinase At5g41260 [Jatropha curcas]
13 Hb_004884_170 0.1564815064 - - hypothetical protein AALP_AA1G067000 [Arabis alpina]
14 Hb_004007_130 0.1575035507 - - PREDICTED: uncharacterized protein LOC105639843 [Jatropha curcas]
15 Hb_004968_040 0.1614993635 - - PREDICTED: rop guanine nucleotide exchange factor 5 [Jatropha curcas]
16 Hb_000567_290 0.1630775714 - - hypothetical protein RCOM_0303940 [Ricinus communis]
17 Hb_001514_170 0.1642897867 - - PREDICTED: putative cyclin-A3-1 [Jatropha curcas]
18 Hb_001584_360 0.1650067952 - - PREDICTED: serine/threonine-protein kinase haspin homolog hrk1 [Jatropha curcas]
19 Hb_000431_100 0.1667802574 - - ribonucleoside-diphosphate reductase small chain, putative [Ricinus communis]
20 Hb_001328_070 0.1671985609 - - PREDICTED: glucan endo-1,3-beta-glucosidase 13 [Jatropha curcas]

Gene co-expression network

sample Hb_001322_160 Hb_001322_160 Hb_020301_020 Hb_020301_020 Hb_001322_160--Hb_020301_020 Hb_000661_150 Hb_000661_150 Hb_001322_160--Hb_000661_150 Hb_000003_060 Hb_000003_060 Hb_001322_160--Hb_000003_060 Hb_002284_260 Hb_002284_260 Hb_001322_160--Hb_002284_260 Hb_007632_210 Hb_007632_210 Hb_001322_160--Hb_007632_210 Hb_005183_150 Hb_005183_150 Hb_001322_160--Hb_005183_150 Hb_020301_020--Hb_000661_150 Hb_020301_020--Hb_005183_150 Hb_001699_270 Hb_001699_270 Hb_020301_020--Hb_001699_270 Hb_020301_020--Hb_007632_210 Hb_000094_230 Hb_000094_230 Hb_020301_020--Hb_000094_230 Hb_005542_150 Hb_005542_150 Hb_020301_020--Hb_005542_150 Hb_000661_150--Hb_001699_270 Hb_101133_050 Hb_101133_050 Hb_000661_150--Hb_101133_050 Hb_001950_090 Hb_001950_090 Hb_000661_150--Hb_001950_090 Hb_001688_100 Hb_001688_100 Hb_000661_150--Hb_001688_100 Hb_000418_040 Hb_000418_040 Hb_000661_150--Hb_000418_040 Hb_001307_150 Hb_001307_150 Hb_000661_150--Hb_001307_150 Hb_093458_020 Hb_093458_020 Hb_000003_060--Hb_093458_020 Hb_004968_040 Hb_004968_040 Hb_000003_060--Hb_004968_040 Hb_000288_090 Hb_000288_090 Hb_000003_060--Hb_000288_090 Hb_010436_080 Hb_010436_080 Hb_000003_060--Hb_010436_080 Hb_006970_130 Hb_006970_130 Hb_000003_060--Hb_006970_130 Hb_000057_190 Hb_000057_190 Hb_000003_060--Hb_000057_190 Hb_002284_260--Hb_093458_020 Hb_124677_050 Hb_124677_050 Hb_002284_260--Hb_124677_050 Hb_004007_130 Hb_004007_130 Hb_002284_260--Hb_004007_130 Hb_002871_130 Hb_002871_130 Hb_002284_260--Hb_002871_130 Hb_003360_010 Hb_003360_010 Hb_002284_260--Hb_003360_010 Hb_000077_110 Hb_000077_110 Hb_002284_260--Hb_000077_110 Hb_007632_210--Hb_005183_150 Hb_007632_210--Hb_124677_050 Hb_007632_210--Hb_000661_150 Hb_002311_090 Hb_002311_090 Hb_007632_210--Hb_002311_090 Hb_003228_050 Hb_003228_050 Hb_007632_210--Hb_003228_050 Hb_007632_210--Hb_101133_050 Hb_033041_010 Hb_033041_010 Hb_005183_150--Hb_033041_010 Hb_005183_150--Hb_003360_010 Hb_001524_120 Hb_001524_120 Hb_005183_150--Hb_001524_120 Hb_007632_080 Hb_007632_080 Hb_005183_150--Hb_007632_080 Hb_005183_150--Hb_124677_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0922419 0.050925 1.64487 1.52436 0.00705439 0.040972
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0684158 0.026918 0.0770207 0.534347 0.114511

CAGE analysis