Hb_000179_260

Information

Type -
Description -
Location Contig179: 248853-252233
Sequence    

Annotation

kegg
ID tcc:TCM_037591
description Zinc ion binding, putative isoform 1
nr
ID XP_012076988.1
description PREDICTED: UBP1-associated proteins 1C isoform X1 [Jatropha curcas]
swissprot
ID O64571
description UBP1-associated proteins 1C OS=Arabidopsis thaliana GN=UBA1C PE=3 SV=2
trembl
ID A0A067KPX9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07445 PE=4 SV=1
Gene Ontology
ID GO:0005488
description ubp1-associated proteins 1c

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000179_260 0.0 - - PREDICTED: UBP1-associated proteins 1C isoform X1 [Jatropha curcas]
2 Hb_027445_070 0.1679738781 - - PREDICTED: denticleless protein homolog [Jatropha curcas]
3 Hb_001688_100 0.2086362385 - - PREDICTED: kinesin-like protein NACK1 [Jatropha curcas]
4 Hb_023386_070 0.2142075611 - - PREDICTED: probable pectinesterase 68 [Jatropha curcas]
5 Hb_001205_280 0.2163677648 - - PREDICTED: probable polyol transporter 6 [Jatropha curcas]
6 Hb_001565_090 0.2178670269 - - PREDICTED: uncharacterized protein LOC105637840 isoform X1 [Jatropha curcas]
7 Hb_000661_150 0.2214922375 - - ubiquitin-conjugating enzyme E2 C, putative [Ricinus communis]
8 Hb_003813_110 0.2244170271 - - conserved hypothetical protein [Ricinus communis]
9 Hb_001384_030 0.2251121052 - - PREDICTED: uncharacterized protein LOC105049010 [Elaeis guineensis]
10 Hb_074674_010 0.2262462013 - - Cell division cycle protein cdt2, putative [Ricinus communis]
11 Hb_000176_040 0.2278971074 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase ASHR3 isoform X2 [Jatropha curcas]
12 Hb_001699_270 0.2315833407 - - PREDICTED: uncharacterized protein LOC105628996 [Jatropha curcas]
13 Hb_046204_010 0.2324168182 - - PREDICTED: peroxidase 5-like [Jatropha curcas]
14 Hb_001301_140 0.2357033231 - - PREDICTED: TMV resistance protein N-like [Jatropha curcas]
15 Hb_001584_360 0.2374259413 - - PREDICTED: serine/threonine-protein kinase haspin homolog hrk1 [Jatropha curcas]
16 Hb_003368_070 0.2393242728 - - PREDICTED: uncharacterized protein LOC105109387 [Populus euphratica]
17 Hb_061361_010 0.2416933707 - - kinase, putative [Ricinus communis]
18 Hb_000418_040 0.2421897701 - - hypothetical protein RCOM_0377590 [Ricinus communis]
19 Hb_002197_010 0.2430954266 - - cyclin d, putative [Ricinus communis]
20 Hb_000035_190 0.2431216247 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_000179_260 Hb_000179_260 Hb_027445_070 Hb_027445_070 Hb_000179_260--Hb_027445_070 Hb_001688_100 Hb_001688_100 Hb_000179_260--Hb_001688_100 Hb_023386_070 Hb_023386_070 Hb_000179_260--Hb_023386_070 Hb_001205_280 Hb_001205_280 Hb_000179_260--Hb_001205_280 Hb_001565_090 Hb_001565_090 Hb_000179_260--Hb_001565_090 Hb_000661_150 Hb_000661_150 Hb_000179_260--Hb_000661_150 Hb_027445_070--Hb_001688_100 Hb_005116_030 Hb_005116_030 Hb_027445_070--Hb_005116_030 Hb_001584_360 Hb_001584_360 Hb_027445_070--Hb_001584_360 Hb_003813_110 Hb_003813_110 Hb_027445_070--Hb_003813_110 Hb_001322_160 Hb_001322_160 Hb_027445_070--Hb_001322_160 Hb_001688_100--Hb_000661_150 Hb_101133_050 Hb_101133_050 Hb_001688_100--Hb_101133_050 Hb_080952_060 Hb_080952_060 Hb_001688_100--Hb_080952_060 Hb_001307_150 Hb_001307_150 Hb_001688_100--Hb_001307_150 Hb_001699_270 Hb_001699_270 Hb_001688_100--Hb_001699_270 Hb_005276_090 Hb_005276_090 Hb_001688_100--Hb_005276_090 Hb_023386_070--Hb_001205_280 Hb_074674_010 Hb_074674_010 Hb_023386_070--Hb_074674_010 Hb_001384_030 Hb_001384_030 Hb_023386_070--Hb_001384_030 Hb_061361_010 Hb_061361_010 Hb_023386_070--Hb_061361_010 Hb_000025_770 Hb_000025_770 Hb_023386_070--Hb_000025_770 Hb_010369_020 Hb_010369_020 Hb_023386_070--Hb_010369_020 Hb_001205_280--Hb_001384_030 Hb_001205_280--Hb_074674_010 Hb_001205_280--Hb_061361_010 Hb_001205_280--Hb_000025_770 Hb_000347_310 Hb_000347_310 Hb_001205_280--Hb_000347_310 Hb_000069_650 Hb_000069_650 Hb_001565_090--Hb_000069_650 Hb_001565_090--Hb_000661_150 Hb_000418_040 Hb_000418_040 Hb_001565_090--Hb_000418_040 Hb_007474_020 Hb_007474_020 Hb_001565_090--Hb_007474_020 Hb_001377_370 Hb_001377_370 Hb_001565_090--Hb_001377_370 Hb_001390_040 Hb_001390_040 Hb_001565_090--Hb_001390_040 Hb_000661_150--Hb_001699_270 Hb_000661_150--Hb_101133_050 Hb_001950_090 Hb_001950_090 Hb_000661_150--Hb_001950_090 Hb_000661_150--Hb_000418_040 Hb_000661_150--Hb_001307_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0172858 0 0.414305 0.244552 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.0578232 0.0372956 0

CAGE analysis