Hb_002387_140

Information

Type -
Description -
Location Contig2387: 107982-113892
Sequence    

Annotation

kegg
ID pmum:103336523
description protein kinase APK1A, chloroplastic-like
nr
ID XP_012066120.1
description PREDICTED: serine/threonine-protein kinase At5g01020-like [Jatropha curcas]
swissprot
ID Q9CAL8
description Proline-rich receptor-like protein kinase PERK13 OS=Arabidopsis thaliana GN=PERK13 PE=2 SV=1
trembl
ID A0A067L3T0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25273 PE=4 SV=1
Gene Ontology
ID GO:0004672
description serine threonine-protein kinase at5g01020-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_25011: 107892-108823
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002387_140 0.0 - - PREDICTED: serine/threonine-protein kinase At5g01020-like [Jatropha curcas]
2 Hb_007213_020 0.218766105 transcription factor TF Family: B3 PREDICTED: B3 domain-containing protein At3g19184 isoform X1 [Jatropha curcas]
3 Hb_000540_210 0.2620519228 - - conserved hypothetical protein [Ricinus communis]
4 Hb_005116_030 0.2690147125 - - PREDICTED: uncharacterized protein LOC105650003 isoform X2 [Jatropha curcas]
5 Hb_008453_040 0.2798408135 - - PREDICTED: expansin-A11 [Jatropha curcas]
6 Hb_002078_230 0.2875562837 - - PREDICTED: HORMA domain-containing protein 1 [Jatropha curcas]
7 Hb_000003_060 0.2974029751 transcription factor TF Family: HMG DNA-binding protein MNB1B, putative [Ricinus communis]
8 Hb_000057_190 0.2987208182 - - conserved hypothetical protein [Ricinus communis]
9 Hb_010436_080 0.3013703086 - - PREDICTED: DNA replication licensing factor MCM5 [Jatropha curcas]
10 Hb_005332_010 0.3032727426 - - hypothetical protein EUGRSUZ_J02276 [Eucalyptus grandis]
11 Hb_002486_070 0.3048494015 transcription factor TF Family: LOB hypothetical protein POPTR_0008s07280g [Populus trichocarpa]
12 Hb_008143_050 0.3049025381 - - PREDICTED: cytochrome P450 710A1-like [Jatropha curcas]
13 Hb_003428_040 0.3059483489 - - PREDICTED: phosphoenolpyruvate/phosphate translocator 2, chloroplastic-like [Jatropha curcas]
14 Hb_004007_130 0.3123523789 - - PREDICTED: uncharacterized protein LOC105639843 [Jatropha curcas]
15 Hb_002311_090 0.3124320049 - - PREDICTED: uncharacterized protein LOC105643503 [Jatropha curcas]
16 Hb_000522_070 0.3134350166 - - PREDICTED: uncharacterized protein LOC105632109 [Jatropha curcas]
17 Hb_180924_010 0.3144484226 - - CPI-4 [Morus alba var. atropurpurea]
18 Hb_001410_030 0.3175261481 - - hypothetical protein JCGZ_20419 [Jatropha curcas]
19 Hb_009339_040 0.3200406925 - - conserved hypothetical protein [Ricinus communis]
20 Hb_002986_040 0.3207140009 - - PREDICTED: uncharacterized protein LOC105639694 [Jatropha curcas]

Gene co-expression network

sample Hb_002387_140 Hb_002387_140 Hb_007213_020 Hb_007213_020 Hb_002387_140--Hb_007213_020 Hb_000540_210 Hb_000540_210 Hb_002387_140--Hb_000540_210 Hb_005116_030 Hb_005116_030 Hb_002387_140--Hb_005116_030 Hb_008453_040 Hb_008453_040 Hb_002387_140--Hb_008453_040 Hb_002078_230 Hb_002078_230 Hb_002387_140--Hb_002078_230 Hb_000003_060 Hb_000003_060 Hb_002387_140--Hb_000003_060 Hb_007213_020--Hb_005116_030 Hb_027445_070 Hb_027445_070 Hb_007213_020--Hb_027445_070 Hb_036182_010 Hb_036182_010 Hb_007213_020--Hb_036182_010 Hb_010369_020 Hb_010369_020 Hb_007213_020--Hb_010369_020 Hb_000621_100 Hb_000621_100 Hb_007213_020--Hb_000621_100 Hb_008115_030 Hb_008115_030 Hb_000540_210--Hb_008115_030 Hb_003787_050 Hb_003787_050 Hb_000540_210--Hb_003787_050 Hb_000365_110 Hb_000365_110 Hb_000540_210--Hb_000365_110 Hb_003428_040 Hb_003428_040 Hb_000540_210--Hb_003428_040 Hb_000574_270 Hb_000574_270 Hb_000540_210--Hb_000574_270 Hb_000483_050 Hb_000483_050 Hb_000540_210--Hb_000483_050 Hb_025163_020 Hb_025163_020 Hb_005116_030--Hb_025163_020 Hb_008215_020 Hb_008215_020 Hb_005116_030--Hb_008215_020 Hb_000069_650 Hb_000069_650 Hb_005116_030--Hb_000069_650 Hb_020301_020 Hb_020301_020 Hb_005116_030--Hb_020301_020 Hb_072201_010 Hb_072201_010 Hb_005116_030--Hb_072201_010 Hb_001950_090 Hb_001950_090 Hb_005116_030--Hb_001950_090 Hb_087388_010 Hb_087388_010 Hb_008453_040--Hb_087388_010 Hb_000347_520 Hb_000347_520 Hb_008453_040--Hb_000347_520 Hb_002986_040 Hb_002986_040 Hb_008453_040--Hb_002986_040 Hb_010866_020 Hb_010866_020 Hb_008453_040--Hb_010866_020 Hb_180924_010 Hb_180924_010 Hb_008453_040--Hb_180924_010 Hb_004032_340 Hb_004032_340 Hb_008453_040--Hb_004032_340 Hb_010436_080 Hb_010436_080 Hb_002078_230--Hb_010436_080 Hb_000260_610 Hb_000260_610 Hb_002078_230--Hb_000260_610 Hb_009339_040 Hb_009339_040 Hb_002078_230--Hb_009339_040 Hb_000288_090 Hb_000288_090 Hb_002078_230--Hb_000288_090 Hb_007545_110 Hb_007545_110 Hb_002078_230--Hb_007545_110 Hb_000181_270 Hb_000181_270 Hb_002078_230--Hb_000181_270 Hb_093458_020 Hb_093458_020 Hb_000003_060--Hb_093458_020 Hb_004968_040 Hb_004968_040 Hb_000003_060--Hb_004968_040 Hb_000003_060--Hb_000288_090 Hb_000003_060--Hb_010436_080 Hb_006970_130 Hb_006970_130 Hb_000003_060--Hb_006970_130 Hb_000057_190 Hb_000057_190 Hb_000003_060--Hb_000057_190
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.00927295 0.0601654 0.0336142 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0255276 0 0 0.0159994 0

CAGE analysis