Hb_027472_110

Information

Type -
Description -
Location Contig27472: 84117-86105
Sequence    

Annotation

kegg
ID rcu:RCOM_1574710
description Patellin-4, putative
nr
ID XP_002513365.1
description Patellin-4, putative [Ricinus communis]
swissprot
ID Q94C59
description Patellin-4 OS=Arabidopsis thaliana GN=PATL4 PE=1 SV=2
trembl
ID B9RHZ6
description Patellin-4, putative OS=Ricinus communis GN=RCOM_1574710 PE=4 SV=1
Gene Ontology
ID GO:0005622
description sec14p-like phosphatidylinositol transfer family

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_027472_110 0.0 - - Patellin-4, putative [Ricinus communis]
2 Hb_003401_010 0.1958112035 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO1 [Jatropha curcas]
3 Hb_005694_050 0.2307901456 - - NC domain-containing family protein [Populus trichocarpa]
4 Hb_054865_010 0.2381764102 - - PREDICTED: uncharacterized membrane protein At1g16860-like [Jatropha curcas]
5 Hb_004116_100 0.2389222514 - - Isoamyl acetate-hydrolyzing esterase, putative [Ricinus communis]
6 Hb_002078_120 0.2395351926 - - PREDICTED: F-box/kelch-repeat protein At1g67480 [Jatropha curcas]
7 Hb_002007_040 0.2395427564 - - unnamed protein product [Coffea canephora]
8 Hb_002307_020 0.2410976301 - - PREDICTED: histone H1-like [Jatropha curcas]
9 Hb_002979_030 0.2442179269 - - PREDICTED: serine/threonine-protein kinase Aurora-1 isoform X2 [Jatropha curcas]
10 Hb_036790_030 0.2455804799 - - PREDICTED: UPF0544 protein C5orf45 homolog [Jatropha curcas]
11 Hb_002639_170 0.2460665615 - - carboxy-lyase, putative [Ricinus communis]
12 Hb_000483_270 0.2488988386 - - PREDICTED: uncharacterized protein LOC105632352 [Jatropha curcas]
13 Hb_000000_180 0.2490430627 - - PREDICTED: 30S ribosomal protein S9, chloroplastic-like [Populus euphratica]
14 Hb_006275_060 0.2526524783 - - hypothetical protein CARUB_v10021660mg, partial [Capsella rubella]
15 Hb_002045_190 0.253938348 - - PREDICTED: histone H2A variant 1 [Jatropha curcas]
16 Hb_000497_240 0.2577606446 transcription factor TF Family: C2H2 PREDICTED: protein indeterminate-domain 2-like [Jatropha curcas]
17 Hb_002045_090 0.2579482497 - - PREDICTED: tryptophan synthase alpha chain-like [Jatropha curcas]
18 Hb_005690_030 0.2591751477 - - hypothetical protein VITISV_020378 [Vitis vinifera]
19 Hb_004449_040 0.2593247313 - - PREDICTED: uncharacterized protein C630.12 [Jatropha curcas]
20 Hb_002311_300 0.2604432298 - - PREDICTED: J protein JJJ2 [Jatropha curcas]

Gene co-expression network

sample Hb_027472_110 Hb_027472_110 Hb_003401_010 Hb_003401_010 Hb_027472_110--Hb_003401_010 Hb_005694_050 Hb_005694_050 Hb_027472_110--Hb_005694_050 Hb_054865_010 Hb_054865_010 Hb_027472_110--Hb_054865_010 Hb_004116_100 Hb_004116_100 Hb_027472_110--Hb_004116_100 Hb_002078_120 Hb_002078_120 Hb_027472_110--Hb_002078_120 Hb_002007_040 Hb_002007_040 Hb_027472_110--Hb_002007_040 Hb_002979_030 Hb_002979_030 Hb_003401_010--Hb_002979_030 Hb_006570_040 Hb_006570_040 Hb_003401_010--Hb_006570_040 Hb_000028_240 Hb_000028_240 Hb_003401_010--Hb_000028_240 Hb_002639_170 Hb_002639_170 Hb_003401_010--Hb_002639_170 Hb_005162_120 Hb_005162_120 Hb_003401_010--Hb_005162_120 Hb_082655_010 Hb_082655_010 Hb_005694_050--Hb_082655_010 Hb_002045_090 Hb_002045_090 Hb_005694_050--Hb_002045_090 Hb_010638_010 Hb_010638_010 Hb_005694_050--Hb_010638_010 Hb_002272_220 Hb_002272_220 Hb_005694_050--Hb_002272_220 Hb_089966_010 Hb_089966_010 Hb_005694_050--Hb_089966_010 Hb_000000_180 Hb_000000_180 Hb_005694_050--Hb_000000_180 Hb_054865_010--Hb_000000_180 Hb_003398_040 Hb_003398_040 Hb_054865_010--Hb_003398_040 Hb_001587_040 Hb_001587_040 Hb_054865_010--Hb_001587_040 Hb_054865_010--Hb_002078_120 Hb_000011_560 Hb_000011_560 Hb_054865_010--Hb_000011_560 Hb_054865_010--Hb_002045_090 Hb_030627_070 Hb_030627_070 Hb_004116_100--Hb_030627_070 Hb_000740_040 Hb_000740_040 Hb_004116_100--Hb_000740_040 Hb_003077_150 Hb_003077_150 Hb_004116_100--Hb_003077_150 Hb_118282_010 Hb_118282_010 Hb_004116_100--Hb_118282_010 Hb_002045_190 Hb_002045_190 Hb_004116_100--Hb_002045_190 Hb_068194_010 Hb_068194_010 Hb_004116_100--Hb_068194_010 Hb_002078_120--Hb_002045_090 Hb_003397_030 Hb_003397_030 Hb_002078_120--Hb_003397_030 Hb_002078_120--Hb_000000_180 Hb_001386_090 Hb_001386_090 Hb_002078_120--Hb_001386_090 Hb_029510_130 Hb_029510_130 Hb_002078_120--Hb_029510_130 Hb_000483_270 Hb_000483_270 Hb_002078_120--Hb_000483_270 Hb_002307_020 Hb_002307_020 Hb_002007_040--Hb_002307_020 Hb_000051_080 Hb_000051_080 Hb_002007_040--Hb_000051_080 Hb_001478_020 Hb_001478_020 Hb_002007_040--Hb_001478_020 Hb_005725_150 Hb_005725_150 Hb_002007_040--Hb_005725_150 Hb_001501_070 Hb_001501_070 Hb_002007_040--Hb_001501_070 Hb_003784_040 Hb_003784_040 Hb_002007_040--Hb_003784_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0348416 0.0442125 0.930005 0.156376 0 0.0113733
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.264227 0.187101 0 0.0414147 0.174946

CAGE analysis