Hb_003401_010

Information

Type -
Description -
Location Contig3401: 3579-9819
Sequence    

Annotation

kegg
ID vvi:100264399
description LRR receptor-like serine/threonine-protein kinase FLS2
nr
ID XP_012072604.1
description PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO1 [Jatropha curcas]
swissprot
ID Q7F8Q9
description Leucine-rich repeat receptor protein kinase MSL1 OS=Oryza sativa subsp. japonica GN=MSL1 PE=2 SV=1
trembl
ID A0A067KKN1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07895 PE=4 SV=1
Gene Ontology
ID GO:0016301
description lrr receptor-like serine threonine-protein kinase gso2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003401_010 0.0 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO1 [Jatropha curcas]
2 Hb_002979_030 0.1778948484 - - PREDICTED: serine/threonine-protein kinase Aurora-1 isoform X2 [Jatropha curcas]
3 Hb_006570_040 0.1834187327 - - hypothetical protein CICLE_v10002683mg [Citrus clementina]
4 Hb_000028_240 0.1954693174 - - conserved hypothetical protein [Ricinus communis]
5 Hb_027472_110 0.1958112035 - - Patellin-4, putative [Ricinus communis]
6 Hb_002639_170 0.2003875155 - - carboxy-lyase, putative [Ricinus communis]
7 Hb_005162_120 0.2105913681 - - ferric reductase oxidase [Manihot esculenta]
8 Hb_000028_250 0.2188925257 - - PREDICTED: nudix hydrolase 4 [Jatropha curcas]
9 Hb_005946_020 0.219871789 - - Pleiotropic drug resistance protein 4 [Triticum urartu]
10 Hb_007002_050 0.229872571 - - PREDICTED: uncharacterized protein LOC105642607 [Jatropha curcas]
11 Hb_005211_150 0.2322694253 transcription factor TF Family: bZIP PREDICTED: transcription factor HBP-1b(c38) isoform X1 [Jatropha curcas]
12 Hb_002007_040 0.2360300188 - - unnamed protein product [Coffea canephora]
13 Hb_000155_150 0.2548297152 - - hypothetical protein CARUB_v10021660mg, partial [Capsella rubella]
14 Hb_033594_040 0.2565036378 - - PREDICTED: heptahelical transmembrane protein 4-like isoform X2 [Jatropha curcas]
15 Hb_000139_280 0.2579840297 - - PREDICTED: mitogen-activated protein kinase kinase kinase NPK1 isoform X1 [Jatropha curcas]
16 Hb_002078_120 0.2606875936 - - PREDICTED: F-box/kelch-repeat protein At1g67480 [Jatropha curcas]
17 Hb_000497_240 0.2618085641 transcription factor TF Family: C2H2 PREDICTED: protein indeterminate-domain 2-like [Jatropha curcas]
18 Hb_036790_030 0.2622950057 - - PREDICTED: UPF0544 protein C5orf45 homolog [Jatropha curcas]
19 Hb_004129_080 0.2632163432 - - PREDICTED: putative DNA-binding protein ESCAROLA [Prunus mume]
20 Hb_002307_020 0.2633423073 - - PREDICTED: histone H1-like [Jatropha curcas]

Gene co-expression network

sample Hb_003401_010 Hb_003401_010 Hb_002979_030 Hb_002979_030 Hb_003401_010--Hb_002979_030 Hb_006570_040 Hb_006570_040 Hb_003401_010--Hb_006570_040 Hb_000028_240 Hb_000028_240 Hb_003401_010--Hb_000028_240 Hb_027472_110 Hb_027472_110 Hb_003401_010--Hb_027472_110 Hb_002639_170 Hb_002639_170 Hb_003401_010--Hb_002639_170 Hb_005162_120 Hb_005162_120 Hb_003401_010--Hb_005162_120 Hb_002979_030--Hb_000028_240 Hb_002007_040 Hb_002007_040 Hb_002979_030--Hb_002007_040 Hb_000155_150 Hb_000155_150 Hb_002979_030--Hb_000155_150 Hb_002979_030--Hb_006570_040 Hb_000663_070 Hb_000663_070 Hb_002979_030--Hb_000663_070 Hb_005946_020 Hb_005946_020 Hb_006570_040--Hb_005946_020 Hb_006570_040--Hb_000028_240 Hb_000139_280 Hb_000139_280 Hb_006570_040--Hb_000139_280 Hb_000190_220 Hb_000190_220 Hb_006570_040--Hb_000190_220 Hb_000260_040 Hb_000260_040 Hb_006570_040--Hb_000260_040 Hb_000956_050 Hb_000956_050 Hb_006570_040--Hb_000956_050 Hb_000028_250 Hb_000028_250 Hb_000028_240--Hb_000028_250 Hb_000028_240--Hb_005162_120 Hb_000441_210 Hb_000441_210 Hb_000028_240--Hb_000441_210 Hb_002205_180 Hb_002205_180 Hb_000028_240--Hb_002205_180 Hb_005694_050 Hb_005694_050 Hb_027472_110--Hb_005694_050 Hb_054865_010 Hb_054865_010 Hb_027472_110--Hb_054865_010 Hb_004116_100 Hb_004116_100 Hb_027472_110--Hb_004116_100 Hb_002078_120 Hb_002078_120 Hb_027472_110--Hb_002078_120 Hb_027472_110--Hb_002007_040 Hb_002639_170--Hb_005162_120 Hb_011609_130 Hb_011609_130 Hb_002639_170--Hb_011609_130 Hb_000261_530 Hb_000261_530 Hb_002639_170--Hb_000261_530 Hb_010288_050 Hb_010288_050 Hb_002639_170--Hb_010288_050 Hb_001241_020 Hb_001241_020 Hb_002639_170--Hb_001241_020 Hb_007317_100 Hb_007317_100 Hb_002639_170--Hb_007317_100 Hb_000115_190 Hb_000115_190 Hb_005162_120--Hb_000115_190 Hb_005162_120--Hb_000028_250 Hb_002218_050 Hb_002218_050 Hb_005162_120--Hb_002218_050 Hb_007002_050 Hb_007002_050 Hb_005162_120--Hb_007002_050 Hb_005162_120--Hb_001241_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0344075 0.815977 0.204491 0 0.00626938
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.122284 0.120284 0 0 0.0769204

CAGE analysis